开源软件名称（OpenSource Name）：

datajoint/datajoint-matlab

开源软件地址(OpenSource Url)：

https://github.com/datajoint/datajoint-matlab

开源编程语言(OpenSource Language)：

MATLAB 99.9%

开源软件介绍(OpenSource Introduction)：

Welcome to DataJoint for MATLAB!

DataJoint for MATLAB is a high-level programming interface for relational databases designed to support data processing chains in science labs. DataJoint is built on the foundation of the relational data model and prescribes a consistent method for organizing, populating, and querying data.

DataJoint was initially developed in 2009 by Dimitri Yatsenko in Andreas Tolias' Lab at Baylor College of Medicine for the distributed processing and management of large volumes of data streaming from regular experiments. Starting in 2011, DataJoint has been available as an open-source project adopted by other labs and improved through contributions from several developers. Presently, the primary developer of DataJoint open-source software is the company DataJoint (https://datajoint.com). Related resources are listed at https://datajoint.org.

Installation

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(Recommended) Greater than R2016b

Utilize MATLAB built-in GUI i.e. Top Ribbon -> Add-Ons -> Get Add-Ons
Search and Select DataJoint
Select Add from GitHub

Using GHToolbox (FileExchange Community Toolbox)

Install GHToolbox using using an appropriate method in https://github.com/datajoint/GHToolbox
run: ghtb.install('datajoint/datajoint-matlab')

Less than R2016b

Utilize MATLAB built-in GUI i.e. Top Ribbon -> Add-Ons -> Get Add-Ons
Search and Select DataJoint
Select Download from GitHub
Save DataJoint.mltbx locally
Navigate in MATLAB tree browser to saved toolbox file
Right-Click and Select Install
Select Install

From Source

Download DataJoint.mltbx locally
Navigate in MATLAB tree browser to saved toolbox file
Right-Click and Select Install
Select Install

Config

For help in utilizing dj.config (added in 3.4.0), you may access the help via help('dj.config') or review it online here. Formal documentation to follow.

Documentation and Tutorials

https://datajoint.org -- start page
https://docs.datajoint.org -- up-to-date documentation
https://tutorials.datajoint.io -- step-by-step tutorials
https://elements.datajoint.org -- catalog of example pipelines
https://codebook.datajoint.io -- interactive online tutorials

Citation

If your work uses DataJoint for MATLAB, please cite the following Research Resource Identifier (RRID) and manuscript.
DataJoint (RRID:SCR_014543) - DataJoint for MATLAB (version <Enter version number>)
Yatsenko D, Reimer J, Ecker AS, Walker EY, Sinz F, Berens P, Hoenselaar A, Cotton RJ, Siapas AS, Tolias AS. DataJoint: managing big scientific data using MATLAB or Python. bioRxiv. 2015 Jan 1:031658. doi: https://doi.org/10.1101/031658

Running Tests Locally

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Create an .env with desired development environment values e.g.

MATLAB_USER=rguzman
MATLAB_LICENSE=IyBCRUd... # For image usage instructions see https://github.com/guzman-raphael/matlab, https://hub.docker.com/r/raphaelguzman/matlab
MATLAB_VERSION=R2019a
MATLAB_HOSTID=XX:XX:XX:XX:XX:XX
MATLAB_UID=1000
MATLAB_GID=1000
MYSQL_TAG=5.7
MINIO_VER=RELEASE.2022-01-03T18-22-58Z

cp local-docker-compose.yaml docker-compose.yaml
docker-compose up (Note configured JUPYTER_PASSWORD)
Select a means of running MATLAB e.g. Jupyter Notebook, GUI, or Terminal (see bottom)
Add tests directory to path e.g. in MATLAB, addpath('tests')
Run desired tests. Some examples are as follows:

Use Case	MATLAB Code
Run all tests	`run(Main)`
Run one class of tests	`run(TestTls)`
Run one specific test	`runtests('TestTls/TestTls_testInsecureConn')`
Run tests based on test name	`import matlab.unittest.TestSuite;` `import matlab.unittest.selectors.HasName;` `import matlab.unittest.constraints.ContainsSubstring;` `suite = TestSuite.fromClass(?Main, ...` `HasName(ContainsSubstring('Conn')));` `run(suite)`

Launch Jupyter Notebook

Navigate to localhost:8888
Input Jupyter password
Launch a notebook i.e. New > MATLAB

Launch MATLAB GUI (supports remote interactive debugger)

Shell into datajoint-matlab_app_1 i.e. docker exec -it datajoint-matlab_app_1 bash
Launch Matlab by runnning command matlab

Launch MATLAB Terminal

Shell into datajoint-matlab_app_1 i.e. docker exec -it datajoint-matlab_app_1 bash
Launch Matlab with no GUI by runnning command matlab -nodisplay