I don't want to give you everything, but I think this should help you out a lot.
Well you can make a circle of ones doing something like
h = fspecial('disk',rad);
h = h>0;
Then you can put that anywhere in a larger matrix doing something like
h2 = zeros(N,M);
h2(c_offset-rad:c_offset+rad,r_offset-rad:r_offset+rad) = h;
Now you have a matrix the same size (col/row size) as your image. You can use this as a reference table for getting data from a matrix, much in the same way you can return only the values above 0.5 by saying
r = rand(10);
d = r(r>0.5);
EDIT:
You'll also need to play around with the data types in some places to make MATLAB happy. For example, h2 will need to be a logical to use it as a reference table for another matrix. And hist won't work without proper types either.
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