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dataframe - remove outliers by group in R

In my dataset, i must delete outliers for each group separately. Here my dataset

vpg=structure(list(customer = c(1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 
1L, 1L, 1L, 2L, 2L, 2L, 2L), code = c(2L, 2L, 3L, 3L, 4L, 4L, 
5L, 5L, 2L, 2L, 3L, 3L, 4L, 4L, 5L, 5L), year = c(2017L, 2017L, 
2017L, 2017L, 2017L, 2017L, 2017L, 2017L, 2018L, 2018L, 2018L, 
2018L, 2018L, 2018L, 2018L, 2018L), stuff = c(10L, 20L, 30L, 
40L, 50L, 60L, 70L, 80L, 10L, 20L, 30L, 40L, 50L, 60L, 70L, 80L
), action = c(0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 
0L, 1L, 0L, 1L)), .Names = c("customer", "code", "year", "stuff", 
"action"), class = "data.frame", row.names = c(NA, -16L))

I must delete outlier from stuff variable, but separately by group customer+code+year

i found this pretty function

remove_outliers <- function(x, na.rm = TRUE, ...) {
  qnt <- quantile(x, probs=c(.25, .75), na.rm = na.rm, ...)
  H <- 1.5 * IQR(x, na.rm = na.rm)
  y <- x
  y[x < (qnt[1] - H)] <- NA
  y[x > (qnt[2] + H)] <- NA
  y
}

new <- remove_outliers(vpg$stuff)
vpg=cbind(new,vpg)
View(vpg)

But it works for all groups. How use this function to delete outlier for each group and get clear dataset for next working ? Note , in this dataset, there is variable action(it tales value 0 and 1). It is not group variable, but outliers must be delete only for ZERO(0) categories of action variable.

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1 Answer

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Here is a solution with data.table:

library("data.table")
setDT(vpg)
vpg[, new:=stuff][action==0, new:=remove_outliers(stuff), by=.(customer, code, year)]

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