Since the table you want is hidden in a comment until revealed by JavaScript, you either need to use RSelenium to run the JavaScript (which is kind of a pain), or parse the comments (which is still a pain, but slightly less so).
library(rvest)
library(readr) # for type_convert
adv <- "http://www.basketball-reference.com/leagues/NBA_2016.html?lid=header_seasons#all_misc_stats"
h <- adv %>% read_html() # be kind; don't rescrape unless necessary
df <- h %>% html_nodes(xpath = '//comment()') %>% # select comments
html_text() %>% # extract comment text
paste(collapse = '') %>% # collapse to single string
read_html() %>% # reread as HTML
html_node('table#misc_stats') %>% # select desired node
html_table() %>% # parse node to table
{ setNames(.[-1, ], paste0(names(.), .[1, ])) } %>% # extract names from first row
type_convert() # fix column types
df[1:6, 1:14]
## Rk Team Age PW PL MOV SOS SRS ORtg DRtg Pace FTr 3PAr TS%
## 2 1 Golden State Warriors* 27.4 65 17 10.76 -0.38 10.38 114.5 103.8 99.3 0.250 0.362 0.593
## 3 2 San Antonio Spurs* 30.3 67 15 10.63 -0.36 10.28 110.3 99.0 93.8 0.246 0.223 0.564
## 4 3 Oklahoma City Thunder* 25.8 59 23 7.28 -0.19 7.09 113.1 105.6 96.7 0.292 0.275 0.565
## 5 4 Cleveland Cavaliers* 28.1 57 25 6.00 -0.55 5.45 110.9 104.5 93.3 0.259 0.352 0.558
## 6 5 Los Angeles Clippers* 29.7 53 29 4.28 -0.15 4.13 108.3 103.8 95.8 0.318 0.324 0.556
## 7 6 Toronto Raptors* 26.3 53 29 4.50 -0.42 4.08 110.0 105.2 92.9 0.328 0.287 0.552
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