I had the same problem, you've to do this way:
php app/console doctrine:mapping:convert metadata_format
./src/App/MyBundle/Resources/config/doctrine
--from-database
--filter="Yourtablename"
Then
php app/console doctrine:mapping:import AppMyBundle
metadata_format --filter="Yourtablename"
Where metadata_format
is the file ending you want to generate (e.g. xml, yml, annotation)
And finally
php app/console doctrine:generate:entities AppMyBundle --no-backup
Like this doctrine will load only the entity you need. Just be carefull on the filter you must use the CamelCase !
Hope this will help you
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