As others have noted, you can't represent integers that large. But R isn't reading those values into integers, it's reading them into double precision numerics.
Double precision can only represent numbers to ~16 places accurately, which is why you see your numbers rounded after 16 places. See the gmp, Rmpfr, and int64 packages for potential solutions. Though I don't see a function to read from a file in any of them, maybe you could cook something up by looking at their sources.
UPDATE:
Here's how you can get your file into an int64
object:
# This assumes your numbers are the only column in the file
# Read them in however, just ensure they're read in as character
a <- scan("temp.csv", what="")
ia <- as.int64(a)
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