Is there any way in CMake to force a path specified via include_directories (or perhaps through a different function) to use the -isystem flag instead of the -I flag when building with gcc?
See http://gcc.gnu.org/onlinedocs/gcc/Directory-Options.html#Directory-Options for details on -I and -isystem.
Yes you force a path to be a system include by using the optional SYSTEM flag
include_directories(SYSTEM path)
http://www.cmake.org/cmake/help/cmake-2-8-docs.html#command:include_directories
Starting with CMake 2.8.12 you can use the new target_include_directories to include system directory includes at the target level, while leveraging the new usage requirement features of cmake:
target_include_directories(foo SYSTEM PUBLIC path)
Now target foo will use path as a system include, and anything that links to foo will also use path as automatically as a system include. You can control the propagation of these usage requirements by changing the PUBLIC keyword to PRIVATE or INTERFACE.
http://cmake.org/cmake/help/v2.8.12/cmake.html#command:target_include_directories
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