If you just need to make the python programs executable, then you can add a line to the top like this:
#!/usr/bin/python
Replace /usr/bin/python with the filepath to python, which can be obtained by typing
which python
into the terminal, assuming you're using a unix-based system.
You can then tell the operating system that the program is executable with
chmod +x nameofprogram
If the java programs require something more complicated than just being able to run the python parts as executables, then you'll probably need to provide more information for anyone to be able to help you.
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