Recent questions tagged slurm

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I have a Snakefile that has a rule which sends 7 different shell commands. I want to run each of ... from:https://stackoverflow.com/questions/65861815/snakemake-and-sbatch...

asked Oct 7, 2021 in Technique[技术] by 深蓝 (71.8m points)

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slurm - Dummy squeue and sinfo

I have some wrappers around squeue and sinfo. Now I would like to create continuous integration (CI) for ... :https://stackoverflow.com/questions/65882596/dummy-squeue-and-sinfo...

asked Oct 7, 2021 in Technique[技术] by 深蓝 (71.8m points)

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831 views

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slurm - Snakemake delete output files from master node if cluster job gets killed

I am running snakemake on the login node of a cluster using the slurm job queuing system. Unfortunately, if a ... delete-output-files-from-master-node-if-cluster-job-gets-killed...

asked Oct 7, 2021 in Technique[技术] by 深蓝 (71.8m points)

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520 views

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slurm - Save a plot in R without png dev.off()

I am running an R script in a batch mode on my university Linux HPC cluster. I am using a module with pre-installed ... .com/questions/65940929/save-a-plot-in-r-without-png-dev-off...

asked Oct 7, 2021 in Technique[技术] by 深蓝 (71.8m points)

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847 views

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slurm - What does the state 'drain' mean?

When I use sinfo I see the following: $ sinfo PARTITION AVAIL TIMELIMIT NODES STATE NODELIST [...] RG3 up ... //stackoverflow.com/questions/22480627/what-does-the-state-drain-mean...

asked Oct 6, 2021 in Technique[技术] by 深蓝 (71.8m points)

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366 views

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slurm - How to start n tasks with one GPU each?

I have a large cluster of computing nodes, each node having 6 GPUs. And I want to start, lets say, 100 workers on that thing ... assigned to it and only it) We use SLURM 20.02.2....

asked Feb 19, 2021 in Technique[技术] by 深蓝 (71.8m points)

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