本文整理汇总了Java中mpicbg.spim.data.sequence.TimePoints类的典型用法代码示例。如果您正苦于以下问题：Java TimePoints类的具体用法？Java TimePoints怎么用？Java TimePoints使用的例子？那么恭喜您, 这里精选的类代码示例或许可以为您提供帮助。
TimePoints类属于mpicbg.spim.data.sequence包，在下文中一共展示了TimePoints类的20个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于我们的系统推荐出更棒的Java代码示例。
示例1: create
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
public static FusionResult create(
final SpimRegistrationSequence spimseq,
final String filepath,
final String filepattern,
final int numSlices,
final double sliceValueMin,
final double sliceValueMax,
final Map< Integer, AffineTransform3D > perTimePointFusionTransforms )
{
// add one fused ViewSetup per channel in the SpimRegistrationSequence
final List< Integer > channels = new ArrayList<>();
for ( final BasicViewSetup setup : spimseq.getSequenceDescription().getViewSetupsOrdered() )
{
final int channel = setup.getAttribute( Channel.class ).getId();
if ( ! channels.contains( channel ) )
channels.add( channel );
}
final TimePoints timepoints = spimseq.getSequenceDescription().getTimePoints();
return new FusionResult( filepath, filepattern, channels, timepoints, numSlices, sliceValueMin, sliceValueMax, perTimePointFusionTransforms );
}
开发者ID:bigdataviewer，项目名称:bigdataviewer_fiji，代码行数:21，代码来源:FusionResult.java
示例2: FusionResult
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
public FusionResult(
final String filepath,
final String filepattern,
final TimePoints timepoints,
final int numSlices,
final double sliceValueMin,
final double sliceValueMax,
final Map< Integer, AffineTransform3D > perTimePointFusionTransforms )
{
final HashMap< Integer, Integer > setupIdToChannelId = new HashMap<>();
setupIdToChannelId.put( 0, 0 );
final ImgLoader fusionLoader = new FusionImageLoader<>( filepath +"/" + filepattern, setupIdToChannelId, numSlices, new FusionImageLoader.Gray32ImagePlusLoader(), sliceValueMin, sliceValueMax );
final int setupId = 0;
final String name = "fused";
final int timepointId = timepoints.getTimePointsOrdered().get( 0 ).getId();
final Dimensions size = fusionLoader.getSetupImgLoader( setupId ).getImageSize( timepointId );
final VoxelDimensions voxelSize = fusionLoader.getSetupImgLoader( setupId ).getVoxelSize( timepointId );
final BasicViewSetup setup = new BasicViewSetup( setupId, name, size, voxelSize );
desc = new SequenceDescriptionMinimal( timepoints, Entity.idMap( Arrays.asList( setup ) ), fusionLoader, null );
final ArrayList< ViewRegistration > registrations = new ArrayList<>();
for ( final TimePoint timepoint : timepoints.getTimePointsOrdered() )
registrations.add( new ViewRegistration( timepoint.getId(), 0, perTimePointFusionTransforms.get( timepoint.getId() ) ) );
regs = new ViewRegistrations( registrations );
}
开发者ID:bigdataviewer，项目名称:bigdataviewer_fiji，代码行数:25，代码来源:FusionResult.java
示例3: createTimePoints
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
/**
* Creates the {@link TimePoints} for the {@link SpimData} object
*/
protected TimePoints createTimePoints(final SlideBook6MetaData meta) {
final ArrayList<TimePoint> timepoints = new ArrayList<TimePoint>();
int firstCapture = defaultCapture;
int numCaptures = 1;
if (defaultCapture == -1) {
firstCapture = 0;
numCaptures = meta.numCaptures();
}
int t = 0;
for (; t < meta.numTimepoints(firstCapture); ++t)
timepoints.add(new TimePoint(t));
return new TimePoints(timepoints);
}
开发者ID:fiji，项目名称:SPIM_Registration，代码行数:20，代码来源:SlideBook6.java
示例4: GraphFrame
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
public GraphFrame(
final TimePoints timepoints,
final JFreeChart chart,
final int referenceTimePoint,
final boolean enableReferenceTimePoint,
final List< SelectTimepointEntry > extraMenuItems,
final ArrayList< RegistrationStatistics > data )
{
super();
mainPanel = new JPanel();
mainPanel.setLayout( new BorderLayout() );
updateWithNewChart( timepoints, chart, true, extraMenuItems, data, referenceTimePoint, enableReferenceTimePoint );
JPanel buttonsPanel = new JPanel();
mainPanel.add( buttonsPanel, BorderLayout.SOUTH );
setContentPane( mainPanel );
validate();
GUI.center( this );
}
开发者ID:fiji，项目名称:SPIM_Registration，代码行数:23，代码来源:GraphFrame.java
示例5: MouseListenerTimelapse
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
MouseListenerTimelapse( final TimePoints timepoints, final ChartPanel panel, final int referenceTimePoint, final boolean enableReferenceTimePoint )
{
this.timepoints = timepoints;
this.panel = panel;
this.referenceTimePoint = referenceTimePoint;
this.enableReferenceTimePoint = enableReferenceTimePoint;
if ( enableReferenceTimePoint || referenceTimePoint != -1 ) // at least show it if it is not -1
{
if ( timepoints != null )
setReferenceTimepoint( timepoints, referenceTimePoint );
valueMarker = makeMarker( referenceTimePoint );
if ( referenceTimePoint >= 0 )
{
((XYPlot)panel.getChart().getPlot()).addDomainMarker( valueMarker );
markerShown = true;
}
}
}
开发者ID:fiji，项目名称:SPIM_Registration，代码行数:22，代码来源:MouseListenerTimelapse.java
示例6: setReferenceTimepoint
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
public static boolean setReferenceTimepoint( final TimePoints timepoints, final int referenceTimePoint )
{
final TimePoint ref = timepoints.getTimePoints().get( referenceTimePoint );
if ( ref != null )
{
final List< TimePoint > tps = timepoints.getTimePointsOrdered();
for ( int tp = 0; tp < tps.size(); ++tp )
{
if ( tps.get( tp ).getId() == referenceTimePoint )
{
Interest_Point_Registration.defaultReferenceTimepointIndex = tp;
return true;
}
}
}
return false;
}
开发者ID:fiji，项目名称:SPIM_Registration，代码行数:19，代码来源:MouseListenerTimelapse.java
示例7: SpimRegistrationSequence
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
public SpimRegistrationSequence( final SPIMConfiguration conf )
{
this.conf = conf;
final ArrayList< ViewSetup > setups = createViewSetups( conf );
// final HashMap< Integer, ViewSetup > setups = Entity.idMap( createViewSetups( conf ) );
final TimePoints timepoints = createTimePoints( conf );
final BasicImgLoader imgLoader = createImageLoader( conf, setups );
viewRegistrations = createViewRegistrations( conf, setups );
sequenceDescription = new SequenceDescriptionMinimal( timepoints, Entity.idMap( createViewSetups( conf ) ), imgLoader, null );
}
开发者ID:bigdataviewer，项目名称:bigdataviewer_fiji，代码行数:14，代码来源:SpimRegistrationSequence.java
示例8: createTimePoints
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
protected static TimePoints createTimePoints( final SPIMConfiguration conf )
{
final ArrayList< TimePoint > timepoints = new ArrayList<>();
for ( final int tp : conf.timepoints )
timepoints.add( new TimePoint( tp ) );
return new TimePoints( timepoints );
}
开发者ID:bigdataviewer，项目名称:bigdataviewer_fiji，代码行数:8，代码来源:SpimRegistrationSequence.java
示例9: readTimePoints
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
public TimePoints readTimePoints()
{
final Element root = document.getRootElement();
final int nTimePoints = Integer.parseInt( root.getChild( "TimelapsCondition" ).getChildText( "Iteration" ) );
final List< TimePoint > timepoints = new ArrayList<>( nTimePoints );
for ( int i = 0; i < nTimePoints; i++ )
{
timepoints.add( new TimePoint( Integer.valueOf( i ) ) );
}
return new TimePoints( timepoints );
}
开发者ID:bigdataviewer，项目名称:bigdataviewer_fiji，代码行数:13，代码来源:CellVoyagerDataExporter.java
示例10: assembleTimepoints
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
protected static String[] assembleTimepoints( final TimePoints timepoints )
{
final String[] tps = new String[ timepoints.size() ];
for ( int t = 0; t < tps.length; ++t )
tps[ t ] = timepoints.getTimePointsOrdered().get( t ).getName();
return tps;
}
开发者ID:fiji，项目名称:SPIM_Registration，代码行数:10，代码来源:Interest_Point_Registration.java
示例11: createTimePoints
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
/**
* Creates the {@link TimePoints} for the {@link SpimData} object
*/
protected TimePoints createTimePoints( final LightSheetZ1MetaData meta )
{
final ArrayList< TimePoint > timepoints = new ArrayList< TimePoint >();
for ( int t = 0; t < meta.numTimepoints(); ++t )
timepoints.add( new TimePoint( t ) );
return new TimePoints( timepoints );
}
开发者ID:fiji，项目名称:SPIM_Registration，代码行数:13，代码来源:LightSheetZ1.java
示例12: createTimePoints
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
/**
* Creates the {@link TimePoints} for the {@link SpimData} object
*/
protected TimePoints createTimePoints( final DHMMetaData meta )
{
final ArrayList< TimePoint > timepoints = new ArrayList< TimePoint >();
for ( int t = 0; t < meta.getTimepoints().size(); ++t )
timepoints.add( new TimePoint( Integer.parseInt( meta.getTimepoints().get( t ) ) ) );
return new TimePoints( timepoints );
}
开发者ID:fiji，项目名称:SPIM_Registration，代码行数:13，代码来源:DHM.java
示例13: createTimePoints
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
/**
* Creates the {@link TimePoints} for the {@link SpimData} object
*/
protected TimePoints createTimePoints( MultipageTiffReader meta )
{
final ArrayList< TimePoint > timepoints = new ArrayList< TimePoint >();
for ( int t = 0; t < meta.numTimepoints(); ++t )
timepoints.add( new TimePoint( t ) );
return new TimePoints( timepoints );
}
开发者ID:fiji，项目名称:SPIM_Registration，代码行数:13，代码来源:MicroManager.java
示例14: createDataset
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
@Override
public SpimData2 createDataset()
{
// collect all the information
if ( !queryInformation() )
return null;
// assemble timepints, viewsetups, missingviews and the imgloader
final TimePoints timepoints = this.createTimePoints();
final ArrayList< ViewSetup > setups = this.createViewSetups();
final MissingViews missingViews = this.createMissingViews();
// instantiate the sequencedescription
final SequenceDescription sequenceDescription = new SequenceDescription( timepoints, setups, null, missingViews );
final ImgLoader imgLoader = createAndInitImgLoader( ".", new File( directory ), imgFactory, sequenceDescription );
sequenceDescription.setImgLoader( imgLoader );
// get the minimal resolution of all calibrations
final double minResolution = Apply_Transformation.assembleAllMetaData(
sequenceDescription,
sequenceDescription.getViewDescriptions().values() );
IOFunctions.println( "Minimal resolution in all dimensions over all views is: " + minResolution );
IOFunctions.println( "(The smallest resolution in any dimension; the distance between two pixels in the output image will be that wide)" );
// create the initial view registrations (they are all the identity transform)
final ViewRegistrations viewRegistrations = createViewRegistrations( sequenceDescription.getViewDescriptions(), minResolution );
// create the initial view interest point object
final ViewInterestPoints viewInterestPoints = new ViewInterestPoints();
viewInterestPoints.createViewInterestPoints( sequenceDescription.getViewDescriptions() );
// finally create the SpimData itself based on the sequence description and the view registration
final SpimData2 spimData = new SpimData2( new File( directory ), sequenceDescription, viewRegistrations, viewInterestPoints, new BoundingBoxes() );
return spimData;
}
开发者ID:fiji，项目名称:SPIM_Registration，代码行数:38，代码来源:StackList.java
示例15: createTimePoints
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
/**
* Creates the {@link TimePoints} for the {@link SpimData} object
*/
protected TimePoints createTimePoints()
{
try
{
return new TimePointsPattern( timepoints );
}
catch ( final ParseException e )
{
throw new RuntimeException( e );
}
}
开发者ID:fiji，项目名称:SPIM_Registration，代码行数:15，代码来源:StackList.java
示例16: main
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
public static void main( String args[] )
{
final ArrayList< RegistrationStatistics > data = defaultData();
final ArrayList< TimePoint > tps = new ArrayList< TimePoint >();
for ( final RegistrationStatistics rs : data )
tps.add( new TimePoint( rs.getTimePoint() ) );
final ArrayList< SelectTimepointEntry > items = new ArrayList< SelectTimepointEntry >();
//items.add( new SelectTimepointEntry( "Select Timepoint", data ) );
plotData( new TimePoints( tps ), data, getOptimalTimePoint( data ), true, items );
}
开发者ID:fiji，项目名称:SPIM_Registration，代码行数:14，代码来源:TimeLapseDisplay.java
示例17: updateWithNewChart
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
synchronized public void updateWithNewChart(
final TimePoints timepoints,
final JFreeChart c,
final boolean setSize,
final List< SelectTimepointEntry > extraMenuItems,
final ArrayList< RegistrationStatistics > data,
final int referenceTimePoint,
final boolean enableReferenceTimePoint )
{
if ( chartPanel != null )
remove( chartPanel );
chartPanel = null;
this.chart = c;
chartPanel = new ChartPanel( c );
mouseListener = new MouseListenerTimelapse( timepoints, chartPanel, referenceTimePoint, enableReferenceTimePoint );
chartPanel.addChartMouseListener( mouseListener );
chartPanel.setMouseWheelEnabled( true );
chartPanel.setHorizontalAxisTrace( true );
mainPanel.add( chartPanel, BorderLayout.CENTER );
// add extra items
final JPopupMenu menu = chartPanel.getPopupMenu();
if ( extraMenuItems != null )
for ( final SelectTimepointEntry m : extraMenuItems )
{
m.setChartPanel( chartPanel );
menu.add( new JMenuItem( m ) );
}
validate();
}
开发者ID:fiji，项目名称:SPIM_Registration，代码行数:36，代码来源:GraphFrame.java
示例18: fromXml
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
@SuppressWarnings( { "unchecked", "rawtypes" } )
public T fromXml( final Element elem, final File basePath ) throws SpimDataException
{
final T sequenceDescription = super.fromXml( elem );
final HashMap< Integer, V > setups = xmlIoViewSetups.fromXml( elem.getChild( xmlIoViewSetups.getTag() ) );
sequenceDescription.setViewSetups( setups );
final TimePoints timepoints = xmlIoTimePoints.fromXml( elem.getChild( xmlIoTimePoints.getTag() ) );
sequenceDescription.setTimePoints( timepoints );
final Element missingViewElem = elem.getChild( xmlIoMissingViews.getTag() );
final MissingViews missingViews = ( missingViewElem == null ) ? null : xmlIoMissingViews.fromXml( missingViewElem );
sequenceDescription.setMissingViews( missingViews );
final Element imgLoaderElem = elem.getChild( IMGLOADER_TAG );
if ( imgLoaderElem != null )
{
final String format = imgLoaderElem.getAttributeValue( IMGLOADER_FORMAT_ATTRIBUTE_NAME );
final XmlIoBasicImgLoader< ? > imgLoaderIo = ImgLoaders.createXmlIoForFormat( format );
final BasicImgLoader imgLoader = imgLoaderIo.fromXml( imgLoaderElem, basePath, sequenceDescription );
setImgLoader( ( AbstractSequenceDescription ) sequenceDescription, imgLoader );
}
else
sequenceDescription.setImgLoader( null );
return sequenceDescription;
}
开发者ID:bigdataviewer，项目名称:spimdata，代码行数:29，代码来源:XmlIoAbstractSequenceDescription.java
示例19: AbstractSequenceDescription
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
public AbstractSequenceDescription( final TimePoints timepoints, final Map< Integer, ? extends V > setups, final L imgLoader, final MissingViews missingViews )
{
this.timepoints = timepoints;
this.setups = setups;
this.imgLoader = imgLoader;
this.missingViews = missingViews;
viewDescriptionsDirty = true;
viewSetupsOrderedDirty = true;
}
开发者ID:bigdataviewer，项目名称:spimdata，代码行数:10，代码来源:AbstractSequenceDescription.java
示例20: createTimePoints
import mpicbg.spim.data.sequence.TimePoints; //导入依赖的package包/类
public static TimePoints createTimePoints() throws ParseException
{
// final ArrayList< TimePoint > tps = new ArrayList< TimePoint >();
// tps.add( new TimePoint( 10 ) );
// tps.add( new TimePoint( 11 ) );
// tps.add( new TimePoint( 12 ) );
// tps.add( new TimePoint( 13 ) );
// final TimePoints timepoints = new TimePoints( tps );
final TimePoints timepoints = new TimePointsPattern( "1-100:20" );
return timepoints;
}
开发者ID:bigdataviewer，项目名称:spimdata，代码行数:12，代码来源:SpimDataExample2.java
注：本文中的mpicbg.spim.data.sequence.TimePoints类示例整理自Github/MSDocs等源码及文档管理平台，相关代码片段筛选自各路编程大神贡献的开源项目，源码版权归原作者所有，传播和使用请参考对应项目的License；未经允许，请勿转载。 |
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