import bdv.viewer.ViewerOptions; //导入依赖的package包/类
public static void main( String[] args )
{
	new ImageJ();
	SpimData spimData = twoAngles();
	
	// crashes for version 2.0.0
	// with version 2.2.0-SNAPSHOT it crashes when calling the brightness dialog, silently
	// doesn't rotate afterwards
	BigDataViewer.open( spimData, "Test 32bit", null, new ViewerOptions() );
}
 

import bdv.viewer.ViewerOptions; //导入依赖的package包/类
public BigWarpViewerFrame(
		BigWarp bw,
		final int width, final int height,
		final List< SourceAndConverter< ? > > sources,
		final BigWarpViewerSettings viewerSettings,
		final CacheControl cache,
		final String title,
		final boolean isMoving,
		final int[] movingIndexList,
		final int[] targetIndexList )
{
	this( bw, width, height, sources, viewerSettings, cache, ViewerOptions.options(), title, isMoving, movingIndexList, targetIndexList );
}
 

import bdv.viewer.ViewerOptions; //导入依赖的package包/类
protected void installKeyboardActions( final JComponent graphComponent )
{
	final InputTriggerConfig inputTriggerConfig = BigDataViewer.getInputTriggerConfig( ViewerOptions.options() );
	NavigationActions.installActionBindings( viewer.getKeybindings(), viewer.getViewerPanel(), inputTriggerConfig );

	final InputMap inputMap = readPropertyFile();
	final ActionMap actionMap = createActionMap();

	viewer.getKeybindings().addActionMap( "mamut", actionMap );
	viewer.getKeybindings().addInputMap( "mamut", inputMap );
}
 

import bdv.viewer.ViewerOptions; //导入依赖的package包/类
@Override
public TrackMateModelView create( final Model model, final Settings settings, final SelectionModel selectionModel )
{
	final SourceSettings ss = ( SourceSettings ) settings;
	final List< SourceAndConverter< ? >> sources = ss.getSources();
	final int numTimePoints = ss.nframes;
	final CacheControl cache = ss.getCacheControl();
	final Bookmarks bookmarks = new Bookmarks();
	// Test if we have 2D images.
	boolean is2D = true;
	for ( final SourceAndConverter< ? > sac : sources )
	{
		final Source< ? > source = sac.getSpimSource();
		for ( int t = 0; t < numTimePoints; t++ )
		{
			if ( source.isPresent( t ) )
			{
				final RandomAccessibleInterval< ? > level = source.getSource( t, 0 );
				if ( level.dimension( 2 ) > 1 )
					is2D = false;

				break;
			}
		}
	}

	final ViewerOptions options = ViewerOptions.options();
	if ( is2D )
		options.transformEventHandlerFactory( BehaviourTransformEventHandlerPlanar.factory() );

	return new MamutViewer( DEFAULT_WIDTH, DEFAULT_HEIGHT,
			sources, numTimePoints, cache,
			model, selectionModel,
			options,
			bookmarks );
}
 

import bdv.viewer.ViewerOptions; //导入依赖的package包/类
public ViewSetupExplorerPanel( final ViewSetupExplorer< AS, X > explorer, final AS data, final String xml, final X io )
	{
		this.explorer = explorer;
		this.listeners = new ArrayList< SelectedViewDescriptionListener< AS > >();
		this.data = data;
		this.xml = xml.replace( "\\", "/" ).replace( "//", "/" ).replace( "/./", "/" );
		this.io = io;
		this.isMac = System.getProperty( "os.name" ).toLowerCase().contains( "mac" );
		this.selectedRows = new HashSet< BasicViewDescription< ? extends BasicViewSetup > >();
		this.firstSelectedVD = null;

		initComponent();

		if ( Hdf5ImageLoader.class.isInstance( data.getSequenceDescription().getImgLoader() ) )
		{
			final BDVPopup bdvpopup = bdvPopup();
			
			if ( bdvpopup != null )
			{
				bdvpopup.bdv = BigDataViewer.open( getSpimData(), xml(), IOFunctions.getProgressWriter(), ViewerOptions.options() );

//				if ( !bdv.tryLoadSettings( panel.xml() ) ) TODO: this should work, but currently tryLoadSettings is protected. fix that.
					InitializeViewerState.initBrightness( 0.001, 0.999, bdvpopup.bdv.getViewer(), bdvpopup.bdv.getSetupAssignments() );

				// do not rotate BDV view by default
				BDVPopup.initTransform( bdvpopup.bdv.getViewer() );

				setFusedModeSimple( bdvpopup.bdv, data );
			}
		}
	}
 

import bdv.viewer.ViewerOptions; //导入依赖的package包/类
public static BigDataViewer createBDV( final ExplorerWindow< ? , ? > panel , LinkOverlay lo)
{
	if ( AbstractImgLoader.class.isInstance( panel.getSpimData().getSequenceDescription().getImgLoader() ) )
	{
		if ( JOptionPane.showConfirmDialog( null,
				"Opening <SpimData> dataset that is not suited for interactive browsing.\n" +
				"Consider resaving as HDF5 for better performance.\n" +
				"Proceed anyways?",
				"Warning",
				JOptionPane.YES_NO_OPTION ) == JOptionPane.NO_OPTION )
			return null;
	}

	boolean allViews2D = true;
	@SuppressWarnings("unchecked")
	final Collection< BasicViewDescription< ? > > viewDescriptions =
		(Collection< BasicViewDescription< ? > >) panel.getSpimData().getSequenceDescription().getViewDescriptions().values();
	for (final BasicViewDescription< ? > vd : viewDescriptions)
		if (vd.isPresent() && vd.getViewSetup().hasSize() && vd.getViewSetup().getSize().dimension( 2 ) != 1)
		{
			allViews2D = false;
			break;
		}

	final ViewerOptions options = ViewerOptions.options().accumulateProjectorFactory( MaximumProjectorARGB.factory );
	if (allViews2D)
	{
		options.transformEventHandlerFactory(new BehaviourTransformEventHandlerPlanarFactory() );
	}

	BigDataViewer bdv = BigDataViewer.open( panel.getSpimData(), 
											"BigDataViewer", 
											null, 
											options );

	BDVPopup.initTransform( bdv.getViewer() );		
	// if ( !bdv.tryLoadSettings( panel.xml() ) ) TODO: this should
	// work, but currently tryLoadSettings is protected. fix that.
	BDVPopup.initBrightness( 0.001, 0.999, bdv.getViewer().getState(), bdv.getSetupAssignments() );

	FilteredAndGroupedExplorerPanel.setFusedModeSimple( bdv, panel.getSpimData() );

	minMaxGroupByChannels( bdv, panel.getSpimData() );
	colorByChannels( bdv, panel.getSpimData(), 0 );

	Set<Class<? extends Entity>> groupingFactors = new HashSet<>();
	groupingFactors.add( Channel.class );
	groupingFactors.add( Illumination.class );		
	groupSourcesByFactors( bdv, panel.getSpimData(), groupingFactors );
		
	FilteredAndGroupedExplorerPanel.updateBDV( bdv, panel.colorMode(), panel.getSpimData(), panel.firstSelectedVD(), ((GroupedRowWindow)panel).selectedRowsGroups());

	bdv.getViewer().addTransformListener( lo );
	bdv.getViewer().getDisplay().addOverlayRenderer( lo );
	
	bdv.getViewerFrame().setVisible( true );		
	bdv.getViewer().requestRepaint();

	return bdv;
	
}
 

import bdv.viewer.ViewerOptions; //导入依赖的package包/类
public MamutViewerPanel( final List< SourceAndConverter< ? >> sources, final int numTimePoints, final CacheControl cache )
{
	this( sources, numTimePoints, cache, ViewerOptions.options() );
}
 

import bdv.viewer.ViewerOptions; //导入依赖的package包/类
/**
 *
 * @param width
 *            width of the display window.
 * @param height
 *            height of the display window.
 * @param sources
 *            the {@link SourceAndConverter sources} to display.
 * @param numTimePoints
 *            number of available timepoints.
 * @param cache
 *            handle to cache. This is used to control io timing. Also, is
 *            is used to subscribe / unsubscribe to the cache as a consumer,
 *            so that eventually the io fetcher threads can be shut down.
 * @param model
 *            the model to show in this view.
 * @param selectionModel
 *            the selection model used to deal with selection.
 * @param optional
 *            optional parameters. See
 *            {@link bdv.viewer.ViewerPanel#getOptionValues()}.
 */
public MamutViewer( final int width, final int height, final List< SourceAndConverter< ? > > sources, final int numTimePoints, final CacheControl cache,
		final Model model, final SelectionModel selectionModel,
		final ViewerOptions optional,
		final Bookmarks bookmarks )
{
	super( "MaMut Viewer", GuiUtil.getSuitableGraphicsConfiguration( GuiUtil.RGB_COLOR_MODEL ) );
	final MessageOverlayAnimator msgOverlay = new MessageOverlayAnimator( DEFAULT_TEXT_DISPLAY_DURATION, DEFAULT_FADEINTIME, DEFAULT_FADEOUTTIME, DEFAULT_FONT );
	viewerPanel = new MamutViewerPanel( sources, numTimePoints, cache, optional.width( width ).height( height ).msgOverlay( msgOverlay ) );
	keybindings = new InputActionBindings();

	this.model = model;
	this.selectionModel = selectionModel;
	this.logger = new MamutViewerLogger();
	this.triggerbindings = new TriggerBehaviourBindings();
	this.bookmarkEditor = new BookmarksEditor( viewerPanel, keybindings, bookmarks );
	bookmarkEditor.setInputMapsToBlock( Arrays.asList( "all" ) );

	getRootPane().setDoubleBuffered( true );
	setPreferredSize( new Dimension( width, height ) );
	add( viewerPanel, BorderLayout.CENTER );
	pack();
	setDefaultCloseOperation( JFrame.DISPOSE_ON_CLOSE );
	addWindowListener( new WindowAdapter()
	{
		@Override
		public void windowClosing( final WindowEvent e )
		{
			viewerPanel.stop();
		}
	} );

	SwingUtilities.replaceUIActionMap( getRootPane(), keybindings.getConcatenatedActionMap() );
	SwingUtilities.replaceUIInputMap( getRootPane(), JComponent.WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, keybindings.getConcatenatedInputMap() );

	final MouseAndKeyHandler mouseAndKeyHandler = new MouseAndKeyHandler();
	mouseAndKeyHandler.setInputMap( triggerbindings.getConcatenatedInputTriggerMap() );
	mouseAndKeyHandler.setBehaviourMap( triggerbindings.getConcatenatedBehaviourMap() );
	viewerPanel.getDisplay().addHandler( mouseAndKeyHandler );

	final TransformEventHandler< ? > tfHandler = viewerPanel.getDisplay().getTransformEventHandler();
	if ( tfHandler instanceof BehaviourTransformEventHandler )
		( ( BehaviourTransformEventHandler< ? > ) tfHandler ).install( triggerbindings );

	this.visibilityAndGroupingDialog = new VisibilityAndGroupingDialog( this, viewerPanel.getVisibilityAndGrouping() );

	this.recordMovieDialog = new MamutRecordMovieDialog( this, viewerPanel, new ProgressWriterLogger( logger ) );
	recordMovieDialog.setLocationRelativeTo( this );
	viewerPanel.getDisplay().addOverlayRenderer( recordMovieDialog );

	this.recordMaxProjectionMovieDialog = new MamutRecordMaxProjectionDialog( this, this, new ProgressWriterLogger( logger )  );
	recordMaxProjectionMovieDialog.setLocationRelativeTo( this );
	viewerPanel.getDisplay().addOverlayRenderer( recordMaxProjectionMovieDialog );

	setIconImage( MaMuT.MAMUT_ICON.getImage() );
	setLocationByPlatform( true );
	setVisible( true );
}
 

import bdv.viewer.ViewerOptions; //导入依赖的package包/类
public static BigDataViewer createBDV( final ViewSetupExplorerPanel< ?, ? > panel )
	{
		BasicImgLoader il = panel.getSpimData().getSequenceDescription().getImgLoader();
		if ( AbstractImgLoader.class.isInstance( il ) || StackImgLoader.class.isInstance( il ) )
		{
			if ( JOptionPane.showConfirmDialog( null,
					"Opening <SpimData> dataset that is not suited for interactive browsing.\n" +
					"Consider resaving as HDF5 for better performance.\n" +
					"Proceed anyways?",
					"Warning",
					JOptionPane.YES_NO_OPTION ) == JOptionPane.NO_OPTION )
				return null;
		}

		BigDataViewer bdv = BigDataViewer.open( panel.getSpimData(), panel.xml(), IOFunctions.getProgressWriter(), ViewerOptions.options() );
//		if ( !bdv.tryLoadSettings( panel.xml() ) ) TODO: this should work, but currently tryLoadSettings is protected. fix that.
			InitializeViewerState.initBrightness( 0.001, 0.999, bdv.getViewer(), bdv.getSetupAssignments() );

		// do not rotate BDV view by default
		BDVPopup.initTransform( bdv.getViewer() );

		ViewSetupExplorerPanel.updateBDV( bdv, panel.colorMode(), panel.getSpimData(), panel.firstSelectedVD(), panel.selectedRows() );

//		final ArrayList< InterestPointSource > interestPointSources = new ArrayList< InterestPointSource >();
//		interestPointSources.add( new InterestPointSource()
//		{
//			private final ArrayList< RealPoint > points;
//			{
//				points = new ArrayList< RealPoint >();
//				final Random rand = new Random();
//				for ( int i = 0; i < 1000; ++i )
//					points.add( new RealPoint( rand.nextDouble() * 1400, rand.nextDouble() * 800, rand.nextDouble() * 300 ) );
//			}
//
//			@Override
//			public final Collection< ? extends RealLocalizable > getLocalCoordinates( final int timepointIndex )
//			{
//				return points;
//			}
//
//			@Override
//			public void getLocalToGlobalTransform( final int timepointIndex, final AffineTransform3D transform )
//			{
//				transform.identity();
//			}
//		} );
//		final InterestPointOverlay interestPointOverlay = new InterestPointOverlay( bdv.getViewer(), interestPointSources );
//		bdv.getViewer().addRenderTransformListener( interestPointOverlay );
//		bdv.getViewer().getDisplay().addOverlayRenderer( interestPointOverlay );
//		bdv.getViewer().removeTransformListener( interestPointOverlay );
//		bdv.getViewer().getDisplay().removeOverlayRenderer( interestPointOverlay );

		return bdv;
	}
 

import bdv.viewer.ViewerOptions; //导入依赖的package包/类
public static Pair< BigDataViewer, Boolean > getBDV( final AbstractSpimData< ? > spimData, final Collection< ViewId > viewIdsToProcess )
	{
		final BDVPopup popup = ViewSetupExplorerPanel.bdvPopup();
		BigDataViewer bdv;
		boolean bdvIsLocal = false;

		if ( popup == null || popup.panel == null )
		{
			// locally run instance
			if ( AbstractImgLoader.class.isInstance( spimData.getSequenceDescription().getImgLoader() ) )
			{
				if ( JOptionPane.showConfirmDialog( null,
						"Opening <SpimData> dataset that is not suited for interactive browsing.\n" +
						"Consider resaving as HDF5 for better performance.\n" +
						"Proceed anyways?",
						"Warning",
						JOptionPane.YES_NO_OPTION ) == JOptionPane.NO_OPTION )
					return null;
			}

			bdv = BigDataViewer.open( spimData, "BigDataViewer", IOFunctions.getProgressWriter(), ViewerOptions.options() );
			bdvIsLocal = true;

//			if ( !bdv.tryLoadSettings( panel.xml() ) ) TODO: this should work, but currently tryLoadSettings is protected. fix that.
				InitializeViewerState.initBrightness( 0.001, 0.999, bdv.getViewer(), bdv.getSetupAssignments() );

			final List< BasicViewDescription< ? > > vds = new ArrayList< BasicViewDescription< ? > >();

			for ( final ViewId viewId : viewIdsToProcess )
				vds.add( spimData.getSequenceDescription().getViewDescriptions().get( viewId ) );

			ViewSetupExplorerPanel.updateBDV( bdv, true, spimData, null, vds );
		}
		else if ( popup.bdv == null )
		{
			// if BDV was closed by the user
			if ( popup.bdv != null && !popup.bdv.getViewerFrame().isVisible() )
				popup.bdv = null;

			try
			{
				bdv = popup.bdv = BDVPopup.createBDV( popup.panel );
			}
			catch (Exception e)
			{
				IOFunctions.println( "Could not run BigDataViewer: " + e );
				e.printStackTrace();
				bdv = popup.bdv = null;
			}
		}
		else
		{
			bdv = popup.bdv;
		}

		return new ValuePair< BigDataViewer, Boolean >( bdv, bdvIsLocal );
	}