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Java AddImport类代码示例

原作者: [db:作者] 来自: [db:来源] 收藏 邀请

本文整理汇总了Java中org.semanticweb.owlapi.model.AddImport的典型用法代码示例。如果您正苦于以下问题:Java AddImport类的具体用法?Java AddImport怎么用?Java AddImport使用的例子?那么恭喜您, 这里精选的类代码示例或许可以为您提供帮助。



AddImport类属于org.semanticweb.owlapi.model包,在下文中一共展示了AddImport类的18个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于我们的系统推荐出更棒的Java代码示例。

示例1: translate

import org.semanticweb.owlapi.model.AddImport; //导入依赖的package包/类
/**
 * Translate the given {@link GafDocument} into an OWL representation of the LEGO model.
 * 
 * @param gaf
 * @return lego ontology
 * @throws OWLException
 * @throws UnknownIdentifierException 
 */
public OWLOntology translate(GafDocument gaf) throws OWLException, UnknownIdentifierException {
	final OWLOntologyManager m = graph.getManager();
	OWLOntology lego = m.createOntology(IRI.generateDocumentIRI());
	OWLOntology sourceOntology = graph.getSourceOntology();
	OWLOntologyID ontologyID = sourceOntology.getOntologyID();
	if (ontologyID != null) {
		Optional<IRI> ontologyIRI = ontologyID.getOntologyIRI();
		if (ontologyIRI.isPresent()) {
			OWLDataFactory f = m.getOWLDataFactory();
			OWLImportsDeclaration importDeclaration = f.getOWLImportsDeclaration(ontologyIRI.get());
			m.applyChange(new AddImport(lego, importDeclaration ));
		}
	}
	translate(gaf.getGeneAnnotations(), lego);
	return lego;
}
 
开发者ID:geneontology,项目名称:minerva,代码行数:25,代码来源:GafToLegoIndividualTranslator.java


示例2: addImportsFromSupportOntologies

import org.semanticweb.owlapi.model.AddImport; //导入依赖的package包/类
public void addImportsFromSupportOntologies() {
	OWLOntology sourceOntology = getSourceOntology();
	OWLDataFactory factory = getDataFactory();
	for (OWLOntology  o : getSupportOntologySet()) {
		Optional<IRI> ontologyIRI = o.getOntologyID().getOntologyIRI();
		if (ontologyIRI.isPresent()) {
			OWLImportsDeclaration importsDeclaration = factory.getOWLImportsDeclaration(ontologyIRI.get());
			AddImport ai = new AddImport(sourceOntology, importsDeclaration);
			LOG.info("Applying: "+ai);
			getManager().applyChange(ai);
		}
		else {
			String msg = "Could not add import due to missing ontology id: "+o;
			LOG.error(msg);
			throw new RuntimeException(msg);
		}
	}
	this.setSupportOntologySet(new HashSet<OWLOntology>());
}
 
开发者ID:owlcollab,项目名称:owltools,代码行数:20,代码来源:OWLGraphWrapperBasic.java


示例3: handleSupportOntologies

import org.semanticweb.owlapi.model.AddImport; //导入依赖的package包/类
private static List<OWLOntologyChange> handleSupportOntologies(OWLGraphWrapper graph)
{
	OWLOntology ontology = graph.getSourceOntology();
	OWLOntologyManager manager = ontology.getOWLOntologyManager();
	OWLDataFactory factory = manager.getOWLDataFactory();
	
	List<OWLOntologyChange> removeImportChanges = new ArrayList<OWLOntologyChange>();
	Set<OWLOntology> supportOntologySet = graph.getSupportOntologySet();
	for (OWLOntology support : supportOntologySet) {
		Optional<IRI> supportIRI = support.getOntologyID().getOntologyIRI();
		if(supportIRI.isPresent()) {
			IRI ontologyIRI = supportIRI.get();
			OWLImportsDeclaration importDeclaration = factory.getOWLImportsDeclaration(ontologyIRI);
			ChangeApplied status = manager.applyChange(new AddImport(ontology, importDeclaration));
			if (ChangeApplied.SUCCESSFULLY == status) {
				// the change was successful, create remove import for later
				removeImportChanges.add(new RemoveImport(ontology, importDeclaration));
			}
		}
	}
	return removeImportChanges;
}
 
开发者ID:owlcollab,项目名称:owltools,代码行数:23,代码来源:AssertInferenceTool.java


示例4: init

import org.semanticweb.owlapi.model.AddImport; //导入依赖的package包/类
/**
 * Initialization consists of setting aboxOntology, if not set - defaults to a new ontology using tbox.
 * @throws OWLOntologyCreationException
 */
private void init() throws OWLOntologyCreationException {
	// abox -> tbox
	if (aboxOntology == null) {
		LOG.debug("Creating abox ontology. mgr = "+getOWLOntologyManager());
		Optional<IRI> tBoxIRI = tboxOntology.getOntologyID().getOntologyIRI();
		if (tBoxIRI.isPresent()) {
			IRI ontologyIRI = IRI.create(tBoxIRI.get()+"__abox");
			aboxOntology = getOWLOntologyManager().getOntology(ontologyIRI);
			if (aboxOntology != null) {
				LOG.warn("Clearing existing abox ontology");
				getOWLOntologyManager().removeOntology(aboxOntology);
			}
			aboxOntology = getOWLOntologyManager().createOntology(ontologyIRI);
			AddImport ai = new AddImport(aboxOntology, 
					getOWLDataFactory().getOWLImportsDeclaration(tBoxIRI.get()));
			getOWLOntologyManager().applyChange(ai);
		}
		else {
			aboxOntology = getOWLOntologyManager().createOntology();
		}
	}
	if (LOG.isDebugEnabled()) {
		LOG.debug(modelId+" manager(T) = "+tboxOntology.getOWLOntologyManager());
		LOG.debug(modelId+" manager(A) = "+aboxOntology.getOWLOntologyManager());
		LOG.debug(modelId+" id(T) = "+tboxOntology.getOntologyID());
		LOG.debug(modelId+" id(A) = "+aboxOntology.getOntologyID());
	}
}
 
开发者ID:geneontology,项目名称:minerva,代码行数:33,代码来源:ModelContainer.java


示例5: testAnnotations

import org.semanticweb.owlapi.model.AddImport; //导入依赖的package包/类
@Test
public void testAnnotations() throws Exception {
	// setup test model/ontology
	OWLOntology o = m.createOntology();
	OWLImportsDeclaration importDeclaration = f.getOWLImportsDeclaration(g.getSourceOntology().getOntologyID().getOntologyIRI().get());
	m.applyChange(new AddImport(o, importDeclaration));
	
	final IRI i1IRI = IRI.generateDocumentIRI();
	final OWLNamedIndividual ni1 = f.getOWLNamedIndividual(i1IRI);
	// declare individual
	m.addAxiom(o, f.getOWLDeclarationAxiom(ni1));
	// add annotations
	m.addAxiom(o, f.getOWLAnnotationAssertionAxiom(i1IRI, 
			f.getOWLAnnotation(f.getOWLAnnotationProperty(
					AnnotationShorthand.comment.getAnnotationProperty()), 
					f.getOWLLiteral("Comment 1"))));
	m.addAxiom(o, f.getOWLAnnotationAssertionAxiom(i1IRI, 
			f.getOWLAnnotation(f.getOWLAnnotationProperty(
					AnnotationShorthand.comment.getAnnotationProperty()), 
					f.getOWLLiteral("Comment 2"))));
	// declare type
	m.addAxiom(o, f.getOWLClassAssertionAxiom(g.getOWLClassByIdentifier("GO:0000003"), ni1));
	
	MolecularModelJsonRenderer r = new MolecularModelJsonRenderer(null, o, null, curieHandler);
	
	JsonOwlIndividual jsonOwlIndividualOriginal = r.renderObject(ni1);
	assertEquals(2, jsonOwlIndividualOriginal.annotations.length);
	
	String json = MolecularModelJsonRenderer.renderToJson(jsonOwlIndividualOriginal, true);
	
	JsonOwlIndividual jsonOwlIndividualParse = MolecularModelJsonRenderer.parseFromJson(json, JsonOwlIndividual.class);
	
	assertNotNull(jsonOwlIndividualParse);
	assertEquals(jsonOwlIndividualOriginal, jsonOwlIndividualParse);
}
 
开发者ID:geneontology,项目名称:minerva,代码行数:36,代码来源:MolecularModelJsonRendererTest.java


示例6: testSimpleClassExpression

import org.semanticweb.owlapi.model.AddImport; //导入依赖的package包/类
private void testSimpleClassExpression(OWLClassExpression ce, String expectedJsonType) throws Exception {
	// setup test model/ontology
	OWLOntology o = m.createOntology();
	OWLImportsDeclaration importDeclaration = f.getOWLImportsDeclaration(g.getSourceOntology().getOntologyID().getOntologyIRI().get());
	m.applyChange(new AddImport(o, importDeclaration));
	
	// create indivdual with a ce type
	final IRI i1IRI = IRI.generateDocumentIRI();
	final OWLNamedIndividual ni1 = f.getOWLNamedIndividual(i1IRI);
	// declare individual
	m.addAxiom(o, f.getOWLDeclarationAxiom(ni1));
	// declare type
	m.addAxiom(o, f.getOWLClassAssertionAxiom(ce, ni1));
	
	
	MolecularModelJsonRenderer r = new MolecularModelJsonRenderer(null, o, null, curieHandler);
	
	JsonOwlIndividual jsonOwlIndividualOriginal = r.renderObject(ni1);
	
	String json = MolecularModelJsonRenderer.renderToJson(jsonOwlIndividualOriginal, true);
	assertTrue(json, json.contains("\"type\": \""+expectedJsonType+"\""));
	
	JsonOwlIndividual jsonOwlIndividualParse = MolecularModelJsonRenderer.parseFromJson(json, JsonOwlIndividual.class);
	
	assertNotNull(jsonOwlIndividualParse);
	assertEquals(jsonOwlIndividualOriginal, jsonOwlIndividualParse);
	
	Set<OWLClassExpression> ces = TestJsonOwlObjectParser.parse(new OWLGraphWrapper(o), jsonOwlIndividualParse.type);
	assertEquals(1, ces.size());
	assertEquals(ce, ces.iterator().next());
}
 
开发者ID:geneontology,项目名称:minerva,代码行数:32,代码来源:MolecularModelJsonRendererTest.java


示例7: addImport

import org.semanticweb.owlapi.model.AddImport; //导入依赖的package包/类
@Deprecated
public void addImport(String importedIRIString) {
	OWLImportsDeclaration iax = dataFactory.getOWLImportsDeclaration(IRI.create(importedIRIString));
	//AddImport addAx = new AddImport(ontology, iax);
	AddImport addAx = new AddImport(getOntology(), iax);
	manager.applyChange(addAx);
}
 
开发者ID:owlcollab,项目名称:owltools,代码行数:8,代码来源:Mooncat.java


示例8: addImport

import org.semanticweb.owlapi.model.AddImport; //导入依赖的package包/类
/**
 * adds an imports declaration between the source ontology and extOnt
 * 
 * @param extOnt
 */
public void addImport(OWLOntology extOnt) {
	Optional<IRI> ontologyIRI = extOnt.getOntologyID().getOntologyIRI();
	if (ontologyIRI.isPresent()) {
		AddImport ai = new AddImport(getSourceOntology(), getDataFactory().getOWLImportsDeclaration(ontologyIRI.get()));
		getManager().applyChange(ai);
	}
	else {
		throw new RuntimeException("Could not add ontology as import, missing ontology ID: "+extOnt);
	}
}
 
开发者ID:owlcollab,项目名称:owltools,代码行数:16,代码来源:OWLGraphWrapperBasic.java


示例9: mergeOntology

import org.semanticweb.owlapi.model.AddImport; //导入依赖的package包/类
public void mergeOntology(OWLOntology extOnt, LabelPolicy labelPolicy) throws OWLOntologyCreationException {
	OWLOntologyManager manager = getManager();
	LOG.info("Merging "+extOnt+" policy: "+labelPolicy);
	for (OWLAxiom axiom : extOnt.getAxioms()) {
	    if (labelPolicy != LabelPolicy.ALLOW_DUPLICATES) {
	        if (axiom instanceof OWLAnnotationAssertionAxiom) {
	            OWLAnnotationAssertionAxiom aa = (OWLAnnotationAssertionAxiom)axiom;
	            if (aa.getProperty().isLabel()) {
	                OWLAnnotationSubject subj = aa.getSubject();
	                if (subj instanceof IRI) {
	                    Optional<OWLLiteral> label = null;
	                    for (OWLAnnotationAssertionAxiom a1 : sourceOntology.getAnnotationAssertionAxioms(subj)) {
	                        if (a1.getProperty().isLabel()) {
	                            label = a1.getValue().asLiteral();
	                        }
	                    }
	                    if (label != null && label.isPresent()) {
                               if (labelPolicy == LabelPolicy.PRESERVE_SOURCE) {
                                   LOG.info("Preserving existing label:" +subj+" "+label+" // ditching: "+axiom);
                                   continue;
                               }
                               if (labelPolicy == LabelPolicy.PRESERVE_EXT) {
                                   LOG.info("Replacing:" +subj+" "+label+" with: "+axiom);
                                   LOG.error("NOT IMPLEMENTED");
                               }
	                    }
	                }
	            }
	        }
	    }
		manager.applyChange(new AddAxiom(sourceOntology, axiom));
	}
	for (OWLImportsDeclaration oid: extOnt.getImportsDeclarations()) {
		manager.applyChange(new AddImport(sourceOntology, oid));
	}
	addCommentToOntology(sourceOntology, "Includes "+summarizeOntology(extOnt));
}
 
开发者ID:owlcollab,项目名称:owltools,代码行数:38,代码来源:OWLGraphWrapperBasic.java


示例10: convertOntology

import org.semanticweb.owlapi.model.AddImport; //导入依赖的package包/类
public OWLOntology convertOntology(Map<Object,Object> m) throws OWLOntologyCreationException {
	Set<OWLAxiom> axioms = null;
	IRI ontologyIRI = null;
	List<OWLOntologyChange> changes = new ArrayList<OWLOntologyChange>();
	List<IRI> importsIRIs = new ArrayList<IRI>();
	for (Object k : m.keySet()) {
		if (k.equals("axioms")) {
			axioms = convertAxioms((Object[]) m.get(k));			
		}
		else if (k.equals("iri")) {
			ontologyIRI = IRI.create((String) m.get(k));
		}
		else if (k.equals("annotations")) {
			// TODO
		}
		else if (k.equals("imports")) {
			IRI importIRI = IRI.create((String) m.get(k));
			importsIRIs.add(importIRI);
			
		}
	}
	OWLOntology ont = manager.createOntology(ontologyIRI);
	for (IRI importsIRI : importsIRIs) {
		AddImport ai = new AddImport(ont, manager.getOWLDataFactory().getOWLImportsDeclaration(importsIRI));
		changes.add(ai);
	}
	manager.applyChanges(changes);
	return ont;
}
 
开发者ID:owlcollab,项目名称:owltools,代码行数:30,代码来源:OWLGsonParser.java


示例11: test

import org.semanticweb.owlapi.model.AddImport; //导入依赖的package包/类
@Test
public void test() throws Exception {
	// load the base ontology
	ParserWrapper pw = new ParserWrapper();
	OWLOntology direct = pw.parseOBO(getResourceIRIString("graph/xref_test.obo"));
	
	OWLGraphWrapper directGraph = new OWLGraphWrapper(direct);
	
	// check that the test class has the expected number of xrefs
	OWLClass c = directGraph.getOWLClassByIdentifier("FOO:0001");
	
	List<String> directDefXrefs = directGraph.getDefXref(c);
	assertEquals(2, directDefXrefs.size());

	List<String> directXrefs = directGraph.getXref(c);
	assertEquals(2, directXrefs.size());
	
	// create an ontology using an import
	OWLOntologyManager manager = pw.getManager();
	OWLDataFactory factory = manager.getOWLDataFactory();
	OWLOntology importer = manager.createOntology();
	OWLImportsDeclaration importDeclaration = factory.getOWLImportsDeclaration(direct.getOntologyID().getOntologyIRI().orNull());
	manager.applyChange(new AddImport(importer, importDeclaration));
	
	OWLGraphWrapper importerGraph = new OWLGraphWrapper(importer);
	
	// check that the wrapper uses also imports for lookups of xrefs
	List<String> importedDefXrefs = importerGraph.getDefXref(c);
	assertEquals(2, importedDefXrefs.size());

	List<String> importedXrefs = importerGraph.getXref(c);
	assertEquals(2, importedXrefs.size());
}
 
开发者ID:owlcollab,项目名称:owltools,代码行数:34,代码来源:ImportedXrefTest.java


示例12: getMergedOntology

import org.semanticweb.owlapi.model.AddImport; //导入依赖的package包/类
public OWLOntology getMergedOntology() {
	final IRI mergedOntologyIRI = IRI.create(queryOntology.getOntologyID()
			.getDefaultDocumentIRI() + "-merged");
	final OWLOntologyManager mm = controller.getOWLOntologyManager();
	if (mm.contains(mergedOntologyIRI)) {
		return mm.getOntology(mergedOntologyIRI);
	} else {
		try {
			final OWLOntology mergedOntology = mm
					.createOntology(mergedOntologyIRI);
			mm.setOntologyFormat(mergedOntology, new RDFXMLOntologyFormat());
			final String mergedOntologyFileName = mergedOntologyIRI
					.toURI()
					.toString()
					.substring(
							mergedOntologyIRI.toURI().toString()
									.lastIndexOf("/") + 1)
					+ ".owl";
			mm.setOntologyDocumentIRI(
					mergedOntology,
					IRI.create(controller.getRuleSpec().getOutputDir()
							.toURI()
							+ "/" + mergedOntologyFileName));
			mm.applyChange(new AddImport(mergedOntology, mm
					.getOWLDataFactory().getOWLImportsDeclaration(
							queryOntology.getOntologyID()
									.getDefaultDocumentIRI())));
			return mergedOntology;
		} catch (OWLOntologyCreationException e) {
			// TODO Auto-generated catch block
			e.printStackTrace();
			return null;
		}
	}
}
 
开发者ID:psiotwo,项目名称:sdlnot-rules,代码行数:36,代码来源:SparqlDLNotRulesEngine.java


示例13: updateOntology

import org.semanticweb.owlapi.model.AddImport; //导入依赖的package包/类
@Override
public void updateOntology(	OWLOntology generatedOntology, 
		IRI generatedOntologyIRI, 
		IRI previousOntologyIRI, 
		URI physicalURI) {
	final OWLModelManager mm = getOWLModelManager();
	IRI iri = generatedOntologyIRI;
	OWLOntology generatedOntologyToDelete = null;
	final List<OWLOntologyChange> changes = new ArrayList<OWLOntologyChange>();
	final Collection<OWLOntology> ontologies = mm.getOntologies();
	for (OWLOntology oo : ontologies) {
		if (iri.equals(oo.getOntologyID().getOntologyIRI())) {
			log.info("Removing ontology " + iri);
			generatedOntologyToDelete = oo;
		}
		changes.add(new RemoveImport(oo, getOWLOntologyManager().getOWLDataFactory()
				.getOWLImportsDeclaration(iri)));
	}
	mm.applyChanges(changes);
	changes.clear();
	
	if (generatedOntologyToDelete != null) {
		if ( !mm.removeOntology(generatedOntologyToDelete) ) {
			log.info("Removing ontology " + generatedOntologyToDelete.getOntologyID() + " NOT succesful.");
		}
	}
	
	changes.add(new SetOntologyID(generatedOntology, iri));
	changes.add(new AddImport(generatedOntology, mm.getOWLDataFactory()
			.getOWLImportsDeclaration(previousOntologyIRI)));
	mm.applyChanges(changes);	
	mm.setPhysicalURI(generatedOntology, physicalURI);		
}
 
开发者ID:psiotwo,项目名称:sdlnot-rules,代码行数:34,代码来源:SparqlDLNotRulesController.java


示例14: updateOntology

import org.semanticweb.owlapi.model.AddImport; //导入依赖的package包/类
@Override
public void updateOntology(
		OWLOntology generatedOntology, IRI generatedOntologyIRI, IRI previousOntologyIRI,
		URI physicalURI) {
	IRI iri = generatedOntologyIRI;
	OWLOntology generatedOntologyToDelete = null;

	final List<OWLOntologyChange> changes = new ArrayList<OWLOntologyChange>();
	final Collection<OWLOntology> ontologies = m.getOntologies();
	for (OWLOntology oo : ontologies) {
		if (iri.equals(oo.getOntologyID().getOntologyIRI())) {
			log.info("Removing ontology " + iri);
			generatedOntologyToDelete = oo;
		}
		changes.add(new RemoveImport(oo, getOWLOntologyManager()
				.getOWLDataFactory().getOWLImportsDeclaration(iri)));
	}
	m.applyChanges(changes);
	changes.clear();

	if (generatedOntologyToDelete != null) {
		m.removeOntology(generatedOntologyToDelete);
	}

	changes.add(new SetOntologyID(generatedOntology, iri));
	changes.add(new AddImport(generatedOntology, m.getOWLDataFactory()
			.getOWLImportsDeclaration(previousOntologyIRI)));
	m.applyChanges(changes);
	m.setOntologyDocumentIRI(generatedOntology, IRI.create(physicalURI));		
	try {
		m.saveOntology(generatedOntology);
	} catch (OWLOntologyStorageException e) {
		// TODO Auto-generated catch block
		e.printStackTrace();
	}
}
 
开发者ID:psiotwo,项目名称:sdlnot-rules,代码行数:37,代码来源:SparqlDLNotRulesCLIController.java


示例15: visit

import org.semanticweb.owlapi.model.AddImport; //导入依赖的package包/类
public OWLOntologyChange visit(AddImport addImport) {
	return new RemoveImport(addImport.getOntology(), addImport.getImportDeclaration());
}
 
开发者ID:geneontology,项目名称:minerva,代码行数:4,代码来源:ReverseChangeGenerator.java


示例16: testUpdateImports

import org.semanticweb.owlapi.model.AddImport; //导入依赖的package包/类
@Test
public void testUpdateImports() throws Exception {
	final OWLOntologyManager m = OWLManager.createOWLOntologyManager();
	final OWLDataFactory f = m.getOWLDataFactory();
	
	// setup other import
	final IRI other = IRI.generateDocumentIRI();
	m.createOntology(other);
	
	// setup additional
	final IRI add1 = IRI.generateDocumentIRI();
	m.createOntology(add1);
	final IRI add2 = IRI.generateDocumentIRI();
	m.createOntology(add2);
	final Set<IRI> additional = new HashSet<IRI>();
	additional.add(add1);
	additional.add(add2);
	
	// setup tbox
	final IRI tboxIRI = IRI.generateDocumentIRI();
	m.createOntology(tboxIRI);
	
	// setup abox
	final OWLOntology abox = m.createOntology(IRI.generateDocumentIRI());
	// add initial imports to abox
	m.applyChange(new AddImport(abox, f.getOWLImportsDeclaration(other)));
	
	// update imports
	CoreMolecularModelManager.updateImports(abox, tboxIRI, additional);
	
	// check the resulting imports
	Set<OWLImportsDeclaration> declarations = abox.getImportsDeclarations();
	assertEquals(4, declarations.size());
	Set<IRI> declaredImports = new HashSet<IRI>();
	for (OWLImportsDeclaration importsDeclaration : declarations) {
		declaredImports.add(importsDeclaration.getIRI());
	}
	assertEquals(4, declaredImports.size());
	assertTrue(declaredImports.contains(tboxIRI));
	assertTrue(declaredImports.contains(add1));
	assertTrue(declaredImports.contains(add1));
	assertTrue(declaredImports.contains(other));
}
 
开发者ID:geneontology,项目名称:minerva,代码行数:44,代码来源:CoreMolecularModelManagerTest.java


示例17: visit

import org.semanticweb.owlapi.model.AddImport; //导入依赖的package包/类
@Override
public void visit(AddImport change) {
	defaultVisit(change);
}
 
开发者ID:liveontologies,项目名称:elk-reasoner,代码行数:5,代码来源:OwlOntologyChangeProcessorVisitor.java


示例18: visit

import org.semanticweb.owlapi.model.AddImport; //导入依赖的package包/类
@Override
public Boolean visit(AddImport change) {
	Objects.requireNonNull(change);
	return false;
}
 
开发者ID:julianmendez,项目名称:jcel,代码行数:6,代码来源:JcelOntologyChangeVisitorEx.java



注:本文中的org.semanticweb.owlapi.model.AddImport类示例整理自Github/MSDocs等源码及文档管理平台,相关代码片段筛选自各路编程大神贡献的开源项目,源码版权归原作者所有,传播和使用请参考对应项目的License;未经允许,请勿转载。


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