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Python moose.start函数代码示例

原作者: [db:作者] 来自: [db:来源] 收藏 邀请

本文整理汇总了Python中moose.start函数的典型用法代码示例。如果您正苦于以下问题:Python start函数的具体用法?Python start怎么用?Python start使用的例子?那么恭喜您, 这里精选的函数代码示例或许可以为您提供帮助。



在下文中一共展示了start函数的20个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于我们的系统推荐出更棒的Python代码示例。

示例1: testNeuroMeshMultiscale

def testNeuroMeshMultiscale():
        useHsolve = 1
        runtime = 0.5
        if useHsolve:
	    elecDt = 50e-6
        else:
	    elecDt = 10e-6
	chemDt = 0.005
	ePlotDt = 0.5e-3
	cPlotDt = 0.005
	plotName = 'nm.plot'

	makeNeuroMeshModel()
	print "after model is completely done"
	for i in moose.wildcardFind( '/model/chem/#/#/#/transloc#' ):
		print i[0].name, i[0].Kf, i[0].Kb, i[0].kf, i[0].kb

	makeChemPlots()
	makeElecPlots()
	makeCaPlots()
	moose.setClock( 0, elecDt )
	moose.setClock( 1, elecDt )
	moose.setClock( 2, elecDt )
	moose.setClock( 4, chemDt )
	moose.setClock( 5, chemDt )
	moose.setClock( 6, chemDt )
	moose.setClock( 7, cPlotDt )
	moose.setClock( 8, ePlotDt )
        if useHsolve:
	    hsolve = moose.HSolve( '/model/elec/hsolve' )
	    moose.useClock( 1, '/model/elec/hsolve', 'process' )
	    hsolve.dt = elecDt
	    hsolve.target = '/model/elec/compt'
	    moose.reinit()
        else:
	    moose.useClock( 0, '/model/elec/##[ISA=Compartment]', 'init' )
	    moose.useClock( 1, '/model/elec/##[ISA=Compartment]', 'process' )
	    moose.useClock( 2, '/model/elec/##[ISA=ChanBase],/model/##[ISA=SynBase],/model/##[ISA=CaConc]','process')

	moose.useClock( 1, '/model/elec/##[ISA=SpikeGen]', 'process' )
	moose.useClock( 2, '/model/##[ISA=SynBase],/model/##[ISA=CaConc]','process')
	#moose.useClock( 5, '/model/chem/##[ISA=PoolBase],/model/##[ISA=ReacBase],/model/##[ISA=EnzBase]', 'process' )
	#moose.useClock( 4, '/model/chem/##[ISA=Adaptor]', 'process' )
	moose.useClock( 4, '/model/chem/#/dsolve', 'process' )
	moose.useClock( 4, '/model/chem/#/ksolve', 'init' )
	moose.useClock( 5, '/model/chem/#/ksolve', 'process' )
	moose.useClock( 6, '/model/chem/spine/adaptCa', 'process' )
	moose.useClock( 6, '/model/chem/dend/DEND/adaptCa', 'process' )
	moose.useClock( 7, '/graphs/chem/#', 'process' )
	moose.useClock( 8, '/graphs/elec/#,/graphs/ca/#', 'process' )
        moose.element( '/model/elec/soma' ).inject = 2e-10
        moose.element( '/model/chem/psd/Ca' ).concInit = 0.001
        moose.element( '/model/chem/spine/Ca' ).concInit = 0.002
        moose.element( '/model/chem/dend/DEND/Ca' ).concInit = 0.003
	moose.reinit()

	moose.start( runtime )
#        moose.element( '/model/elec/soma' ).inject = 0
#	moose.start( 0.25 )
        makeGraphics( cPlotDt, ePlotDt )
开发者ID:2pysarthak,项目名称:moose-examples,代码行数:60,代码来源:multi3.py


示例2: make_neuron_spike

 def make_neuron_spike(nrnidx,I=1e-7,duration=1e-3):
     """ Inject a brief current pulse to
     make a neuron spike
     """
     network.vec[nrnidx].inject = I
     moose.start(duration)
     network.vec[nrnidx].inject = 0.
开发者ID:dilawar,项目名称:moose-examples,代码行数:7,代码来源:GraupnerBrunel2012_STDPfromCaPlasticity.py


示例3: run

def run(nogui):
    
    reader = NML2Reader(verbose=True)

    filename = 'test_files/NML2_SingleCompHHCell.nml'
    print('Loading: %s'%filename)
    reader.read(filename, symmetric=True)
    
    
    msoma = reader.getComp(reader.doc.networks[0].populations[0].id,0,0)
    print(msoma)
    
    
    data = moose.Neutral('/data')
    
    pg = reader.getInput('pulseGen1')
    
    inj = moose.Table('%s/pulse' % (data.path))
    moose.connect(inj, 'requestOut', pg, 'getOutputValue')
    
    
    vm = moose.Table('%s/Vm' % (data.path))
    moose.connect(vm, 'requestOut', msoma, 'getVm')
    
    simdt = 1e-6
    plotdt = 1e-4
    simtime = 300e-3
    #moose.showmsg( '/clock' )
    for i in range(8):
        moose.setClock( i, simdt )
    moose.setClock( 8, plotdt )
    moose.reinit()
    moose.start(simtime)
    
    print("Finished simulation!")
    
    t = np.linspace(0, simtime, len(vm.vector))
    
    if not nogui:
        import matplotlib.pyplot as plt

        vfile = open('moose_v_hh.dat','w')

        for i in range(len(t)):
            vfile.write('%s\t%s\n'%(t[i],vm.vector[i]))
        vfile.close()
        plt.subplot(211)
        plt.plot(t, vm.vector * 1e3, label='Vm (mV)')
        plt.legend()
        plt.title('Vm')
        plt.subplot(212)
        plt.title('Input')
        plt.plot(t, inj.vector * 1e9, label='injected (nA)')
        #plt.plot(t, gK.vector * 1e6, label='K')
        #plt.plot(t, gNa.vector * 1e6, label='Na')
        plt.legend()
        plt.figure()
        test_channel_gates()
        plt.show()
        plt.close()
开发者ID:hrani,项目名称:moose-core,代码行数:60,代码来源:run_hhcell.py


示例4: singleCompt

def singleCompt( name, params ):
    mod = moose.copy( '/library/' + name + '/' + name, '/model' )
    A = moose.element( mod.path + '/A' )
    Z = moose.element( mod.path + '/Z' )
    Z.nInit = 1
    Ca = moose.element( mod.path + '/Ca' )
    CaStim = moose.element( Ca.path + '/CaStim' )
    runtime = params['preStimTime'] + params['stimWidth'] + params['postStimTime'] 
    steptime = 100

    CaStim.expr += ' + x2 * (t > ' + str( runtime ) + ' ) * ( t < ' + str( runtime + steptime ) +  ' )'
    print(CaStim.expr)
    tab = moose.Table2( '/model/' + name + '/Atab' )
    #for i in range( 10, 19 ):
        #moose.setClock( i, 0.01 )
    ampl = moose.element( mod.path + '/ampl' )
    phase = moose.element( mod.path + '/phase' )
    moose.connect( tab, 'requestOut', A, 'getN' )
    ampl.nInit = params['stimAmplitude'] * 1
    phase.nInit = params['preStimTime']

    ksolve = moose.Ksolve( mod.path + '/ksolve' )
    stoich = moose.Stoich( mod.path + '/stoich' )
    stoich.compartment = mod
    stoich.ksolve = ksolve
    stoich.path = mod.path + '/##'
    runtime += 2 * steptime

    moose.reinit()
    moose.start( runtime )
    t = np.arange( 0, runtime + 1e-9, tab.dt )
    return name, t, tab.vector
开发者ID:dilawar,项目名称:moose-examples,代码行数:32,代码来源:Fig2_v4.py


示例5: run_LIF

def run_LIF():
	## reset and run the simulation
	print("Reinit MOOSE.")
	## from moose_utils.py sets clocks and resets
	resetSim(['/cells[0]'], SIMDT, PLOTDT, simmethod='ee')
	print("Running now...")
	moose.start(RUNTIME)
开发者ID:dilawar,项目名称:moose-examples,代码行数:7,代码来源:LIFxml_firing.py


示例6: main

def main():
    """ This example illustrates loading, running of an SBML model defined in XML format.\n
	The model 00001-sbml-l3v1.xml is taken from l3v1 SBML testcase.\n
	Plots are setup.\n
	Model is run for 20sec.\n
	As a general rule we created model under '/path/model' and plots under '/path/graphs'.\n
    """

    mfile =  os.path.join( script_dir, 'chem_models/00001-sbml-l3v1.xml')
    runtime = 20.0
        
    # Loading the sbml file into MOOSE, models are loaded in path/model
    sbmlId = moose.readSBML(mfile,'sbml')
    

    s1 = moose.element('/sbml/model/compartment/S1')
    s2= moose.element('/sbml/model/compartment/S2')
                      
    # Creating MOOSE Table, Table2 is for the chemical model
    graphs = moose.Neutral( '/sbml/graphs' )
    outputs1 = moose.Table2 ( '/sbml/graphs/concS1')
    outputs2 = moose.Table2 ( '/sbml/graphs/concS2')

    # connect up the tables
    moose.connect( outputs1,'requestOut', s1, 'getConc' );
    moose.connect( outputs2,'requestOut', s2, 'getConc' );

        
    # Reset and Run
    moose.reinit()
    moose.start(runtime)
开发者ID:2pysarthak,项目名称:moose-core-personal,代码行数:31,代码来源:test_sbml_support.py


示例7: run_sim_parallel

def run_sim_parallel(passive=True, solver='hsolve'):
    data_info_list = []
    model_info_list = []
    for jj, ti in enumerate(intervals):
        for ii, st in enumerate(stim_order):
            experiment_name = 'expt_%d_%d' % (jj, ii)
            dinfo, minfo = setup_experiment(experiment_name, st, tonset, ti, passive=passive, solver=solver)
            data_info_list.append(dinfo)
            model_info_list.append(minfo)
    mutils.setDefaultDt(elecdt=simdt)
    mutils.assignDefaultTicks()
    moose.reinit()
    moose.start(tstop)
    print('$$$$$$$$$$$', moose.element('/clock'    ).currentTime)
    axes_vm = fig.add_subplot(111)
    # axes_vm_out = fig.add_subplot(121)
    # axes_vm_in = fig.add_subplot(122, sharex=axes_vm_out, sharey=axes_vm_out)
    ################
    # axes_vm = fig.add_subplot(311)
    # axes_nmda = fig.add_subplot(312)
    # axes_ampa = fig.add_subplot(313)
    for jj, ti in enumerate(intervals):
        for ii, st in enumerate(stim_order):
            dinfo = data_info_list[jj * len(stim_order) + ii]
            print('Interval=', ti, 'Stim order=', st)
            print('dinfo:', dinfo)
            print(dinfo['soma_vm'])
            print(dinfo['soma_vm'].vector)
            v = dinfo['soma_vm'].vector
            t = np.linspace(0, tstop, len(v))
            print('num points=', len(t), 't0=', t[0], 't_last=', t[-1], 'v0=', v[0], 'v_last=', v[-1])
开发者ID:hrani,项目名称:moose-core,代码行数:31,代码来源:rc19.py


示例8: resetAndStartSimulation

 def resetAndStartSimulation(self):
     """TODO this should provide a clean scheduling through all kinds
     of simulation or default scheduling should be implemented in MOOSE
     itself. We need to define a policy for handling scheduling. It can
     be pushed to the plugin-developers who should have knowledge of
     the scheduling criteria for their domain."""
     settings = config.MooseSetting()
     try:
         simdt_kinetics = float(settings[config.KEY_KINETICS_SIMDT])
     except ValueError:
         simdt_kinetics = 0.1
     try:
         simdt_electrical = float(settings[config.KEY_ELECTRICAL_SIMDT])
     except ValueError:
         simdt_electrical = 0.25e-4
     try:
         plotdt_kinetics = float(settings[config.KEY_KINETICS_PLOTDT])
     except ValueError:
         plotdt_kinetics = 0.1
     try:
         plotdt_electrical = float(settings[config.KEY_ELECTRICAL_PLOTDT])
     except ValueError:
         plotdt_electrical = 0.25e-3
     try:
         simtime = float(settings[config.KEY_SIMTIME])
     except ValueError:
         simtime = 1.0
     moose.reinit()
     view = self.plugin.getRunView()
     moose.start(simtime)
     if view.getCentralWidget().plotAll:
         view.getCentralWidget().plotAllData()
     self.setCurrentView('run')        
开发者ID:Vivek-sagar,项目名称:moose-1,代码行数:33,代码来源:mgui.py


示例9: continueSimulation

 def continueSimulation(self):
     """TODO implement this somewhere else"""
     try:
         simtime = float(config.MooseSetting()[config.KEY_SIMTIME])
     except ValueError:
         simtime = 1.0
     moose.start(simtime)      
开发者ID:Vivek-sagar,项目名称:moose-1,代码行数:7,代码来源:mgui.py


示例10: main

def main():
    """
    A toy compartmental neuronal + chemical model that causes bad things
    to happen to the hsolver, as of 28 May 2013. Hopefully this will
    become irrelevant soon.
    """
    fineDt = 1e-5
    coarseDt = 5e-5
    make_spiny_compt()
    make_plots()
    for i in range( 8 ):
        moose.setClock( i, fineDt )
    moose.setClock( 8, coarseDt )
    moose.reinit()
    moose.start( 0.1 )
    display_plots( 'instab.plot' )
    # make Hsolver and rerun
    hsolve = moose.HSolve( '/n/hsolve' )
    for i in range( 8 ):
        moose.setClock( i, coarseDt )
    hsolve.dt = coarseDt
    hsolve.target = '/n/compt'
    moose.reinit()
    moose.start( 0.1 )
    display_plots( 'h_instab.plot' )
    pylab.show()
开发者ID:asiaszmek,项目名称:moose,代码行数:26,代码来源:HsolveInstability.py


示例11: test_crossing_single

def test_crossing_single():
    """This function creates an ematrix of two PulseGen elements and
    another ematrix of two Table elements.

    The two pulsegen elements have same amplitude but opposite phase.

    Table[0] is connected to PulseGen[1] and Table[1] to Pulsegen[0].

    In the plot you should see two square pulses of opposite phase.

    """
    size = 2
    pg = moose.PulseGen('pulsegen', size)
    for ix, ii in enumerate(pg.vec):
        pulse = moose.element(ii)
        pulse.delay[0] = 1.0
        pulse.width[0] = 2.0
        pulse.level[0] = (-1)**ix
    tab = moose.Table('table', size)
    moose.connect(tab.vec[0], 'requestOut', pg.vec[1], 'getOutputValue', 'Single')
    moose.connect(tab.vec[1], 'requestOut', pg.vec[0], 'getOutputValue', 'Single')
    print 'Neighbors:'
    for t in tab.vec:
        print t.path
        for n in moose.element(t).neighbors['requestOut']:
            print 'requestOut <-', n.path
    moose.setClock(0, 0.1)
    moose.useClock(0, '/##', 'process')
    moose.start(5)
    for ii in tab.vec:
        t = moose.Table(ii).vector
        print len(t)
        pylab.plot(t)
    pylab.show()
开发者ID:csiki,项目名称:MOOSE,代码行数:34,代码来源:singlemsgcross.py


示例12: main

def main():
		makeModel()
                '''
                '''
		ksolve = moose.Ksolve( '/model/compartment/ksolve' )
		stoich = moose.Stoich( '/model/compartment/stoich' )
		stoich.compartment = moose.element( '/model/compartment' )
		stoich.ksolve = ksolve
		stoich.path = "/model/compartment/##"
		#solver.method = "rk5"
		#mesh = moose.element( "/model/compartment/mesh" )
		#moose.connect( mesh, "remesh", solver, "remesh" )
                '''
		moose.setClock( 5, 1.0 ) # clock for the solver
		moose.useClock( 5, '/model/compartment/ksolve', 'process' )
                '''

		moose.reinit()
		moose.start( 100.0 ) # Run the model for 100 seconds.
                func = moose.element( '/model/compartment/d/func' )
                if useY:
                    func.expr = "-y0 + 10*y1"
                else:
                    func.expr = "-x0 + 10*x1"
		moose.start( 100.0 ) # Run the model for 100 seconds.
                #moose.showfields( '/model/compartment/d' )
                #moose.showfields( '/model/compartment/d/func' )
                print func.x.value
                print moose.element( '/model/compartment/b' ).n

		# Iterate through all plots, dump their contents to data.plot.
		displayPlots()

		quit()
开发者ID:2pysarthak,项目名称:moose-examples,代码行数:34,代码来源:changeFuncExpression.py


示例13: main

def main():
	"""
	This snippet shows the use of several objects.
	This snippet sets up a StimulusTable to control a RandSpike which
	sends its outputs to two places: to a SimpleSynHandler on an IntFire,
	which is used to monitor spike arrival, and to various Stats objects.
    Each of these are recorded and plotted.
	The StimulusTable has a sine-wave waveform.
	"""
        make_model()

        moose.reinit()
        moose.start( runtime )
        plots = moose.element( '/plots' )
        plot1 = moose.element( '/plot1' )
        plot2 = moose.element( '/plot2' )
        plotf = moose.element( '/plotf' )
        t = [i * dt for i in range( plot1.vector.size )]
        pylab.plot( t, plots.vector, label='stimulus' )
        pylab.plot( t, plot1.vector, label='spike rate mean' )
        pylab.plot( t, plot2.vector, label='Vm mean' )
        pylab.plot( t, plotf.vector, label='Vm' )
        pylab.legend()
        pylab.show()

	'''
开发者ID:asiaszmek,项目名称:moose,代码行数:26,代码来源:RandSpikeStats.py


示例14: testCubeMultiscale

def testCubeMultiscale( useSolver ):
    elecDt = 10e-6
    chemDt = 1e-4
    plotDt = 5e-4
    plotName = 'mc.plot'
    if ( useSolver ):
        elecDt = 50e-6
        chemDt = 2e-3
        plotName = 'mcs.plot'
    makeCubeMultiscale()

    makeChemPlots()
    makeElecPlots()
    moose.setClock( 0, elecDt )
    moose.setClock( 1, elecDt )
    moose.setClock( 2, elecDt )
    moose.setClock( 5, chemDt )
    moose.setClock( 6, chemDt )
    moose.setClock( 7, plotDt )
    moose.setClock( 8, plotDt )
    moose.useClock( 0, '/model/elec/##[ISA=Compartment]', 'init' )
    moose.useClock( 1, '/model/elec/##[ISA=Compartment],/model/elec/##[ISA=SpikeGen]', 'process' )
    moose.useClock( 2, '/model/elec/##[ISA=SynBase],/model/elec/##[ISA=ChanBase],/model/elec/##[ISA=CaConc]','process')
    moose.useClock( 5, '/model/##[ISA=ReacBase],/model/##[ISA=EnzBase]', 'process' )
    moose.useClock( 6, '/model/##[ISA=PoolBase],/model/chem/##[ISA=Adaptor]', 'process' )
    moose.useClock( 7, '/graphs/#', 'process' )
    moose.useClock( 8, '/graphs/elec/#', 'process' )
    if ( useSolver ):
        makeSolvers( elecDt )
    moose.reinit()
    moose.start( 1.0 )
    dumpPlots( plotName )
开发者ID:2pysarthak,项目名称:moose-examples,代码行数:32,代码来源:multiComptSigNeur.py


示例15: loadAndRun

def loadAndRun(solver=True):
    simtime = 500e-3
    model = moose.loadModel('../data/h10.CNG.swc', '/cell')
    comp = moose.element('/cell/apical_e_177_0')
    soma = moose.element('/cell/soma')
    for i in range(10):
        moose.setClock(i, dt)
    if solver:
        solver = moose.HSolve('/cell/solver')
        solver.target = soma.path
        solver.dt = dt
    stim = moose.PulseGen('/cell/stim')
    stim.delay[0] = 50e-3
    stim.delay[1] = 1e9
    stim.level[0] = 1e-9
    stim.width[0] = 2e-3    
    moose.connect(stim, 'output', comp, 'injectMsg')
    tab = moose.Table('/cell/Vm')
    moose.connect(tab, 'requestOut', comp, 'getVm')
    tab_soma = moose.Table('/cell/Vm_soma')
    moose.connect(tab_soma, 'requestOut', soma, 'getVm')
    moose.reinit()
    print('[INFO] Running for %s' % simtime)
    moose.start(simtime )
    vec = tab_soma.vector 
    moose.delete( '/cell' )
    return vec
开发者ID:rahulgayatri23,项目名称:moose-core,代码行数:27,代码来源:issue_93.py


示例16: run_single_channel

def run_single_channel(channelname, Gbar, simtime, simdt=testutils.SIMDT, plotdt=testutils.PLOTDT):
    testId = uuid.uuid4().int
    container = moose.Neutral('test%d' % (testId))
    model_container = moose.Neutral('%s/model' % (container.path))
    data_container = moose.Neutral('%s/data' % (container.path))
    params = testutils.setup_single_compartment(
        model_container, data_container,
        channelbase.prototypes[channelname],
        Gbar)
    vm_data = params['Vm']
    gk_data = params['Gk']
    ik_data = params['Ik']
    testutils.setup_clocks(simdt, plotdt)
    testutils.assign_clocks(model_container, data_container)
    moose.reinit()
    print 'Starting simulation', testId, 'for', simtime, 's'
    moose.start(simtime)
    print 'Finished simulation'
    vm_file = 'data/%s_Vm.dat' % (channelname)
    gk_file = 'data/%s_Gk.dat' % (channelname)
    ik_file = 'data/%s_Ik.dat' % (channelname)
    tseries = np.array(range(len(vm_data.vec))) * simdt
    print 'Vm:', len(vm_data.vec), 'Gk', len(gk_data.vec), 'Ik', len(ik_data.vec)
    data = np.c_[tseries, vm_data.vec]
    np.savetxt(vm_file, data)
    print 'Saved Vm in', vm_file
    print len(gk_data.vec), len(vm_data.vec)
    data = np.c_[tseries, gk_data.vec]
    np.savetxt(gk_file, data)
    print 'Saved Gk in', gk_file
    data = np.c_[tseries, ik_data.vec]
    np.savetxt(ik_file, data)
    print 'Saved Gk in', ik_file
    return params
开发者ID:OpenSourceBrain,项目名称:Thalamocortical,代码行数:34,代码来源:channel_test_util.py


示例17: main

def main():
        """
        This example illustrates loading, and running a kinetic model 
        for a bistable positive feedback system, defined in kkit format. 
        This is based on Bhalla, Ram and Iyengar, Science 2002.

        The core of this model is a positive feedback loop comprising of
        the MAPK cascade, PLA2, and PKC. It receives PDGF and Ca2+ as 
        inputs.

        This model is quite a large one and due to some stiffness in its
        equations, it runs somewhat slowly. 

        The simulation illustrated here shows how the model starts out in
        a state of low activity. It is induced to 'turn on' when a 
        a PDGF stimulus is given for 400 seconds. 
        After it has settled to the new 'on' state, model is made to 
        'turn off'
        by setting the system calcium levels to zero for a while. This
        is a somewhat unphysiological manipulation!
        """
        solver = "gsl"  # Pick any of gsl, gssa, ee..
        #solver = "gssa"  # Pick any of gsl, gssa, ee..
	mfile = '../../genesis/acc35.g'
	runtime = 2000.0
	if ( len( sys.argv ) == 2 ):
                solver = sys.argv[1]
	modelId = moose.loadModel( mfile, 'model', solver )
        # Increase volume so that the stochastic solver gssa 
        # gives an interesting output
        compt = moose.element( '/model/kinetics' )
        compt.volume = 5e-19 

	moose.reinit()
	moose.start( 500 ) 
        moose.element( '/model/kinetics/PDGFR/PDGF' ).concInit = 0.0001
	moose.start( 400 ) 
        moose.element( '/model/kinetics/PDGFR/PDGF' ).concInit = 0.0
	moose.start( 2000 ) 
        moose.element( '/model/kinetics/Ca' ).concInit = 0.0
	moose.start( 500 ) 
        moose.element( '/model/kinetics/Ca' ).concInit = 0.00008
	moose.start( 2000 ) 

	# Display all plots.
        img = mpimg.imread( 'mapkFB.png' )
        fig = plt.figure( figsize=(12, 10 ) )
        png = fig.add_subplot( 211 )
        imgplot = plt.imshow( img )
        ax = fig.add_subplot( 212 )
	x = moose.wildcardFind( '/model/#graphs/conc#/#' )
        t = numpy.arange( 0, x[0].vector.size, 1 ) * x[0].dt
        ax.plot( t, x[0].vector, 'b-', label=x[0].name )
        ax.plot( t, x[1].vector, 'c-', label=x[1].name )
        ax.plot( t, x[2].vector, 'r-', label=x[2].name )
        ax.plot( t, x[3].vector, 'm-', label=x[3].name )
        plt.ylabel( 'Conc (mM)' )
        plt.xlabel( 'Time (seconds)' )
        pylab.legend()
        pylab.show()
开发者ID:2pysarthak,项目名称:moose-examples,代码行数:60,代码来源:mapkFB.py


示例18: run_model_fig7

def run_model_fig7(chans_1, chans_2, chans_3):
    to_run = simtime
    delta_t = 0.25 * tau
    for ii in range(0, len(chans_1), 2):
        print(ii)
        print('-----------------')
        chans_1[ii].Gk = 1 / Rm
        chans_1[ii+1].Gk = 1 / Rm
        chans_2[-ii-1].Gk = 1 / Rm
        chans_2[-ii-2].Gk = 1 / Rm
        for chan in chans_3:
            chan.Gk = 0.25 / Rm
        
        for chan in chans_1:
            print(chan.Gk, end=' ')
        print()
        for chan in chans_2:
            print(chan.Gk, end=' ')
        print()
        moose.start(delta_t)
        for chan in chans_1:
            chan.Gk = 0.0
        for chan in chans_2:
            chan.Gk = 0.0
        to_run = to_run - delta_t
    for chan in chans_3:
        chan.Gk = 0.0
    moose.start(to_run)
开发者ID:BhallaLab,项目名称:moose-examples,代码行数:28,代码来源:rall64.py


示例19: loadGran98NeuroML_L123

def loadGran98NeuroML_L123(filename):
    neuromlR = NeuroML()
    populationDict, projectionDict = \
        neuromlR.readNeuroMLFromFile(filename)
    soma_path = populationDict['Gran'][1][0].path+'/Soma_0'
    somaVm = setupTable('somaVm',moose.Compartment(soma_path),'Vm')
    somaCa = setupTable('somaCa',moose.CaConc(soma_path+'/Gran_CaPool_98'),'Ca')
    somaIKCa = setupTable('somaIKCa',moose.HHChannel(soma_path+'/Gran_KCa_98'),'Gk')
    ## Am not able to plot KDr gating variable X when running under hsolve
    #KDrX = setupTable('ChanX',moose.HHChannel(soma_path+'/Gran_KDr_98'),'X')

    print "Reinit MOOSE ... "
    resetSim(['/elec',cells_path], simdt, plotdt, simmethod='hsolve')

    print "Running ... "
    moose.start(runtime)
    tvec = arange(0.0,runtime*2.0,plotdt)
    tvec = tvec[ : somaVm.vector.size ]
    plot(tvec,somaVm.vector)
    title('Soma Vm')
    xlabel('time (s)')
    ylabel('Voltage (V)')
    figure()
    plot(tvec,somaCa.vector)
    title('Soma Ca')
    xlabel('time (s)')
    ylabel('Ca conc (mol/m^3)')
    figure()
    plot(tvec,somaIKCa.vector)
    title('soma KCa current')
    xlabel('time (s)')
    ylabel('KCa current (A)')
    print "Showing plots ..."
    show()
开发者ID:csiki,项目名称:MOOSE,代码行数:34,代码来源:Granule98_hsolve.py


示例20: test

def test():
    global finish_all_
    os.environ['MOOSE_STREAMER_ADDRESS'] = 'http://127.0.0.1:%d'%port_
    done = mp.Value('d', 0)
    q = mp.Queue()
    client = mp.Process(target=socket_client, args=(q, done))
    client.start()

    time.sleep(0.1)

    print( '[INFO] Socket client is running now' )
    ts = models.simple_model_a()
    moose.reinit()
    time.sleep(0.1)
    # If TCP socket is created, some delay is often neccessary before start. Don't
    # know why. probably some latency in a fresh TCP socket. A TCP guru can
    # tell.
    moose.start(50)
    print( 'MOOSE is done' )

    time.sleep(0.5)
    done.value = 1
    res = q.get()
    client.join()

    if not res:
        raise RuntimeWarning('Nothing was streamed')
    for k in res:
        a = res[k][1::2]
        b = moose.element(k).vector
        print(k, len(a), len(b))
        assert( (a==b).all())
    print( 'Test 1 passed' )
开发者ID:hrani,项目名称:moose-core,代码行数:33,代码来源:testDisabled_socket_streamer_tcp.py



注:本文中的moose.start函数示例由纯净天空整理自Github/MSDocs等源码及文档管理平台,相关代码片段筛选自各路编程大神贡献的开源项目,源码版权归原作者所有,传播和使用请参考对应项目的License;未经允许,请勿转载。


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