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C++ V3DPluginArgList类代码示例

原作者: [db:作者] 来自: [db:来源] 收藏 邀请

本文整理汇总了C++中V3DPluginArgList类的典型用法代码示例。如果您正苦于以下问题：C++ V3DPluginArgList类的具体用法？C++ V3DPluginArgList怎么用？C++ V3DPluginArgList使用的例子？那么恭喜您, 这里精选的类代码示例或许可以为您提供帮助。



在下文中一共展示了V3DPluginArgList类的20个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于我们的系统推荐出更棒的C++代码示例。

示例1: dofunc

bool mostVesselTracerPlugin::dofunc(const QString & func_name, const V3DPluginArgList & input, V3DPluginArgList & output, V3DPluginCallback2 & callback,  QWidget * parent)
{
    vector<char*> infiles, inparas, outfiles;
    if(input.size() >= 1) infiles = *((vector<char*> *)input.at(0).p);
    if(input.size() >= 2) inparas = *((vector<char*> *)input.at(1).p);
    if(output.size() >= 1) outfiles = *((vector<char*> *)output.at(0).p);

    if (func_name == tr("MOST_trace"))
    {
        return autotrace(input, output,callback);
    }
    else if (func_name == tr("help"))
    {
        cout<<"Usage : v3d -x dllname -f MOST_trace -i <inimg_file> -p <ch> <th> <seed> <slip>"<<endl;
        cout<<endl;
        cout<<"ch           the input channel value, start from 1, default 1"<<endl;
        cout<<"th           the threshold value, default 20"<<endl;
        cout<<"seed         window size of the seed, default 20"<<endl;
        cout<<"slip         window size to slip from seed, default 20"<<endl;
        cout<<"The output swc file will be named automatically based on the input image file nmae"<<endl;
        cout<<endl;
        cout<<endl;
    }
    else return false;

    return true;
}
开发者ID:Vaa3D，项目名称:vaa3d_tools，代码行数:27，代码来源:mostVesselTracer.cpp


示例2: dofunc

bool SigenPlugin::dofunc(
    const QString &func_name,
    const V3DPluginArgList &input,
    V3DPluginArgList & /* output */,
    V3DPluginCallback2 &callback,
    QWidget *parent) {
  using std::vector;
  if (func_name == tr("trace")) {
    input_PARA PARA;
    vector<char *> *pinfiles = (input.size() >= 1) ? (vector<char *> *)input[0].p : 0;
    vector<char *> *pparas = (input.size() >= 2) ? (vector<char *> *)input[1].p : 0;
    vector<char *> infiles = (pinfiles != 0) ? *pinfiles : vector<char *>();
    vector<char *> paras = (pparas != 0) ? *pparas : vector<char *>();
    if (infiles.empty()) {
      fprintf(stderr, "Need input image. \n");
      return false;
    } else {
      PARA.inimg_file = infiles[0];
    }
    int k = 0;
    PARA.channel = ((int)paras.size() >= k + 1) ? atoi(paras[k]) : 1;
    k++;
    reconstruction_func(callback, parent, PARA, /* via_gui = */ false);
  } else if (func_name == tr("help")) {
    ////HERE IS WHERE THE DEVELOPERS SHOULD UPDATE THE USAGE OF THE PLUGIN
    printf("**** Usage of SIGEN tracing **** \n");
    printf("vaa3d -x SIGEN -f trace -i <inimg_file> -p <channel> <other parameters>\n");
    printf("inimg_file       The input image\n");
    printf("channel          Data channel for tracing. Start from 1 (default 1).\n");
    printf("outswc_file      Will be named automatically based on the input image file name, so you don't have to specify it.\n\n");
  } else {
    return false;
  }
  return true;
}
开发者ID:arosh，项目名称:Vaa3D-SIGEN，代码行数:35，代码来源:SIGEN_plugin.cpp


示例3: processImage

bool processImage(V3DPluginCallback2 &callback, const V3DPluginArgList & input, V3DPluginArgList & output, unsigned int rotateflag)
{
     cout<<"Welcome to Rotate image"<<endl;
	if (input.size() != 1 || output.size() != 1) return false;

	char * inimg_file = ((vector<char*> *)(input.at(0).p))->at(0);
	char * outimg_file = ((vector<char*> *)(output.at(0).p))->at(0);

     cout<<"rotateflag = "<<rotateflag<<endl;

	cout<<"inimg_file = "<<inimg_file<<endl;
	cout<<"outimg_file = "<<outimg_file<<endl;

	unsigned char * data1d = 0;
    V3DLONG in_sz[4];

	int datatype;
    if(!simple_loadimage_wrapper(callback, inimg_file, data1d, in_sz, datatype))
     {
          cerr<<"load image "<<inimg_file<<" error!"<<endl;
          return false;
     }

     unsigned char* outimg = 0;
     V3DLONG szx=in_sz[0], szy=in_sz[1], szz=in_sz[2], szc=in_sz[3];

     switch (datatype)
     {
          case 1: rotateimage(data1d, in_sz, V3D_UINT8, rotateflag, outimg); break;
          case 2: rotateimage(data1d, in_sz, V3D_UINT16, rotateflag, outimg); break;
          case 4: rotateimage(data1d, in_sz, V3D_FLOAT32, rotateflag, outimg); break;
          default:
               v3d_msg("Invalid datatype.");
               if (data1d) {delete []data1d; data1d=0;}
               return false;
     }

     // save image
     switch(rotateflag)
     {
          case 1:
          case 2:
               in_sz[0]=szy; in_sz[1]=szx;
               simple_saveimage_wrapper(callback, outimg_file, (unsigned char *)outimg, in_sz, datatype);
               break;

          case 3:
               in_sz[0]=szx; in_sz[1]=szy;
               simple_saveimage_wrapper(callback, outimg_file, (unsigned char *)outimg, in_sz, datatype);
               break;
          default:
               break;
     }

     if (outimg) {delete []outimg; outimg =0;}
     if (data1d) {delete []data1d; data1d=0;}

     return true;
}
开发者ID:Vaa3D，项目名称:vaa3d_tools，代码行数:59，代码来源:rotateimg90.cpp


示例4: swc2eswc_io

bool swc2eswc_io(const V3DPluginArgList & input, V3DPluginArgList & output)
{
	cout<<"Welcome to swc2eswc_io"<<endl;
	
	vector<char*>* inlist = (vector<char*>*)(input.at(0).p);
	vector<char*>* outlist = NULL;

	if(input.size() != 1) 
	{
		printf("Please specify both input file name.\n");
		return false;
	}

	QString fileOpenName = QString(inlist->at(0));
	QString fileSaveName;
	QString tmp = fileOpenName;
	if (output.size()==0)
	{
		printf("No outputfile specified.\n");
		tmp.chop(3);
		fileSaveName = tmp + "eswc";
	}
	else if (output.size()==1)
	{
		outlist = (vector<char*>*)(output.at(0).p);
		fileSaveName = QString(outlist->at(0));
	}
	else
	{
		printf("You have specified more than 1 output file.\n");
		return false;
	}

	NeuronTree neuron;
	vector<V3DLONG> segment_id, segment_layer;
	if (fileOpenName.endsWith(".swc") || fileOpenName.endsWith(".SWC"))
	{
		neuron = readSWC_file(fileOpenName);
		segment_id, segment_layer;
		if (!swc2eswc(neuron,segment_id, segment_layer))
		{
			v3d_msg("Cannot convert swc to eswc.", 0);
			return false;
		}
	}
	else {
		v3d_msg("The file type you specified is not supported. Please check.", 0);
		return false;
	}
	
	if (!export_eswc(neuron,segment_id,segment_layer,qPrintable(fileOpenName),qPrintable(fileSaveName)))
	{
		v3d_msg("fail to write the output eswc file.", 0);
		return false;
	}
	return true;
}
开发者ID:Vaa3D，项目名称:vaa3d_tools，代码行数:57，代码来源:eswc_converter_func.cpp


示例5: median_swc_func

bool median_swc_func(const V3DPluginArgList & input, V3DPluginArgList & output)
{
    if(input.size()==0) return false;

    //parsing input
    vector<char *> * inlist =  (vector<char*> *)(input.at(0).p);
    if (inlist->size() == 0)
    {
        cerr<<"You must specify input linker or swc files"<<endl;
        return false;
    }

    V3DLONG neuronNum = 0;
    vector<NeuronTree> nt_list;
    QString qs_linker;
    QStringList nameList;
    for (int i=0;i<inlist->size();i++)
    {
        qs_linker = QString(inlist->at(i));
        if (qs_linker.toUpper().endsWith(".ANO"))
        {
            cout<<"(0). reading a linker file."<<endl;
            P_ObjectFileType linker_object;
            if (!loadAnoFile(qs_linker,linker_object))
            {
                fprintf(stderr,"Error in reading the linker file.\n");
                return 1;
            }
            nameList = linker_object.swc_file_list;
            neuronNum += nameList.size();
            for (V3DLONG i=0;i<neuronNum;i++)
            {
                NeuronTree tmp = readSWC_file(nameList.at(i));
                nt_list.push_back(tmp);
            }
        }
        else if (qs_linker.toUpper().endsWith(".SWC"))
        {
            cout<<"(0). reading an swc file"<<endl;
            NeuronTree tmp = readSWC_file(qs_linker);
            nt_list.push_back(tmp);
            neuronNum++;
        }
    }


    cout << "There are "<<nt_list.size() <<" input neurons."<<endl;
    int idx = median_swc(nt_list);
    if (idx <0){
        cerr << "error in median_swc()" << endl;
        return false;
    }

    cout<<"Median swc is " << idx << endl;
    return true;
}
开发者ID:RobertLu5566，项目名称:vaa3d_tools，代码行数:56，代码来源:consensus_skeleton_func.cpp


示例6: dofunc

bool retype_swc::dofunc(const QString & func_name, const V3DPluginArgList & input, V3DPluginArgList & output, V3DPluginCallback2 & callback,  QWidget * parent)
{
    vector<char*> infiles, paras, outfiles;
    if(input.size() >= 1) infiles = *((vector<char*> *)input.at(0).p);
    if(input.size() >= 2) paras = *((vector<char*> *)input.at(1).p);
    if(output.size() >= 1) outfiles = *((vector<char*> *)output.at(0).p);

    if (func_name == tr("retype"))
    {
        cout<<"Welcome to swc retyping plugin"<<endl;
        if(infiles.empty())
        {
            cerr<<"Need input swc file"<<endl;
            return false;
        }

        QString  inswc_file =  infiles[0];
        int k=0;
        int type = (paras.size() >= k+1) ? atoi(paras[k]) : 3;  k++;//0;

        QString  outswc_file;
        if(!outfiles.empty())
            outswc_file = outfiles[0];
        else
            outswc_file = inswc_file + "_retyped.swc";

        cout<<"inswc_file = "<<inswc_file.toStdString().c_str()<<endl;
        cout<<"node type = "<<type<<endl;
        cout<<"outswc_file = "<<outswc_file.toStdString().c_str()<<endl;

        NeuronTree nt;
        nt = readSWC_file(inswc_file);
        for(V3DLONG i = 0; i < nt.listNeuron.size(); i++)
        {
            if(nt.listNeuron[i].parent == -1)
                nt.listNeuron[i].type = 1;
            else
                nt.listNeuron[i].type = type;
        }
        if (!export_list2file(nt.listNeuron,outswc_file,inswc_file))
        {
            v3d_msg("fail to write the output swc file.");
            return false;
        }
    }
    else if (func_name == tr("help"))
    {
        cout<<"Usage : v3d -x dllname -f retype -i <inswc_file> -o <outswc_file> -p <type>"<<endl;
        cout<<endl;
    }
	else return false;

	return true;
}
开发者ID:Vaa3D，项目名称:vaa3d_tools，代码行数:54，代码来源:retype_swc_plugin.cpp


示例7: dofunc

bool RivuletPlugin::dofunc(const QString & func_name, const V3DPluginArgList & input, V3DPluginArgList & output, V3DPluginCallback2 & callback,  QWidget * parent)
{
	if (func_name == tr("tracing_func"))
	{
        bool bmenu = false;
        input_PARA PARA;

        vector<char*> * pinfiles = (input.size() >= 1) ? (vector<char*> *) input[0].p : 0;
        vector<char*> * pparas = (input.size() >= 2) ? (vector<char*> *) input[1].p : 0;
        vector<char*> infiles = (pinfiles != 0) ? * pinfiles : vector<char*>();
        vector<char*> paras = (pparas != 0) ? * pparas : vector<char*>();

        if(infiles.empty())
        {
            fprintf (stderr, "Need input image. \n");
            return false;
        }
        else
            PARA.inimg_file = infiles[0];
        int k=0;
        PARA.channel = (paras.size() >= k+1) ? atoi(paras[k]) : 1;  k++;
        PARA.threshold = (paras.size() >= k+1) ? atoi(paras[k]) : 10;  k++;
        PARA.stepsize = (paras.size() >= k+1) ? atoi(paras[k]) : 1;  k++;
        PARA.gap = (paras.size() >= k+1) ? atoi(paras[k]) : 15;  k++;
        PARA.dumpbranch = (paras.size() >= k+1) ? atoi(paras[k]) : 0;  k++;
        PARA.connectrate = (paras.size() >= k+1) ? atof(paras[k]) : 1.5;  k++;
        PARA.percentage = (paras.size() >= k+1) ? atof(paras[k]) : 0.98;  k++;
        if (PARA.percentage > 1.0)
            PARA.percentage = 1.0;
        PARA.sigma = (paras.size() >= k+1) ? atoi(paras[k]) : 1;  k++;
        PARA.alpha_one = (paras.size() >= k+1) ? atoi(paras[k]) : 1;  k++;
        PARA.alpha_two = (paras.size() >= k+1) ? atoi(paras[k]) : 1;  k++;
        reconstruction_func(callback,parent,PARA,bmenu);
	}
    else if (func_name == tr("help"))
    {
		printf("**** Usage of Rivulet tracing **** \n");
		printf("vaa3d -x Rivulet -f tracing_func -i <inimg_file> -p <channel> <threshold> <stepsize> <gap> <dumpbranch> <connectrate> <percentage>\n");
        printf("inimg_file\tThe input image\n");
        printf("channel\tData channel for tracing. Start from 1 (default 1).\n");
        printf("threshold\tThe background threshold for segmentation (default 10).\n");
        printf("stepsize\tThe step size of gradient descent tracing (default 1).\n");
        printf("gap\tThe gap allowed for steps on background voxels. Useful for noisy images (default 15)\n");
        printf("dumpbranch\tWhether the unconnected branches will be dumpped. (default 0)\n");
        printf("connectrate\tBranch terminis within connectrate*(radius+3) will be connected to the trunk. (default 1.5)\n");
        printf("percentage\tThe converage expected on the binary image before stopping tracing. (default 0.98)\n");
        printf("outswc_file\tWill be named automatically based on the input image file name, so you don't have to specify it.\n\n");

	}
	else return false;

	return true;
}
开发者ID:CBL-ORION，项目名称:vaa3d_tools-1，代码行数:53，代码来源:Rivulet_plugin.cpp


示例8: dofunc

bool NeuroStalker::dofunc(const QString & func_name, 
                          const V3DPluginArgList & input,
                          V3DPluginArgList & output, 
                          V3DPluginCallback2 & callback,  
                          QWidget * parent)
{
    if (func_name == tr("tracing_func"))
    {
        bool bmenu = false;
        input_PARA PARA;

        vector<char*> * pinfiles = (input.size() >= 1) ? (vector<char*> *) input[0].p : 0;
        vector<char*> * pparas = (input.size() >= 2) ? (vector<char*> *) input[1].p : 0;
        vector<char*> infiles = (pinfiles != 0) ? * pinfiles : vector<char*>();
        vector<char*> paras = (pparas != 0) ? * pparas : vector<char*>();

        if(infiles.empty())
        {
            fprintf (stderr, "Need input image. \n");
            return false;
        }
        else
            PARA.inimg_file = infiles[0];
        int k=0;
        PARA.channel = (paras.size() >= k+1) ? atoi(paras[k]) : 1;  k++;
        PARA.preprocessing = (paras.size() >= k+1) ? atoi(paras[k]) : 1;  k++;
        PARA.unittest = (paras.size() >= k+1) ? atoi(paras[k]) : 1;  k++;
        PARA.step = (paras.size() >= k+1) ? atoi(paras[k]) : 1;  k++;
        PARA.stepsize = (paras.size() >= k+1) ? atoi(paras[k]) : 1;  k++;
        PARA.threshold = (paras.size() >= k+1) ? atoi(paras[k]) : 1;  k++;
        cout<<"Input step test: "<<PARA.step<<endl;
        reconstruction_func(callback,parent,PARA,bmenu);
    }
    else if (func_name == tr("help"))
    {

        ////HERE IS WHERE THE DEVELOPERS SHOULD UPDATE THE USAGE OF THE PLUGIN

        printf("**** Usage of NeuroStalker tracing **** \n");
        printf("vaa3d -x NeuroStalker -f tracing_func -i <inimg_file> -p <channel> <preprocessing> <run unit-tests>\n");
        printf("inimg_file       The input image\n");
        printf("channel          Data channel for tracing. Start from 1 (default 1).\n");
        printf("preprocessing    The preprocessing flag - 1: Crop Only; 2: Downsample; 3: Downsample and crop; \n");
        printf("run unit-tests   - 1: Run Tracing Only; 2: Run unit-tests only; 3: Run Both Unit Tests and Tracing; \n");
        printf("outswc_file      Will be named automatically based on the input image file name, so you don't have to specify it.\n\n");

    }
    else return false;

    return true;
}
开发者ID:lsqshr，项目名称:Neurostalker，代码行数:51，代码来源:NeuroStalker_plugin.cpp


示例9: dofunc

bool neurontracing_rotation::dofunc(const QString & func_name, const V3DPluginArgList & input, V3DPluginArgList & output, V3DPluginCallback2 & callback,  QWidget * parent)
{
	if (func_name == tr("tracing_func"))
    {
        bool bmenu = false;
        input_PARA PARA;

        vector<char*> * pinfiles = (input.size() >= 1) ? (vector<char*> *) input[0].p : 0;
        vector<char*> * pparas = (input.size() >= 2) ? (vector<char*> *) input[1].p : 0;
        vector<char*> infiles = (pinfiles != 0) ? * pinfiles : vector<char*>();
        vector<char*> paras = (pparas != 0) ? * pparas : vector<char*>();

        if(infiles.empty())
        {
            fprintf (stderr, "Need input image. \n");
            return false;
        }

        PARA.inimg_file = infiles[0];
        PARA.image = 0;
        int k=0;
       // QString inmarker_file = paras.empty() ? "" : paras[k]; if(inmarker_file == "NULL") inmarker_file = ""; k++;
        PARA.rotation_degree = (paras.size() >= k+1) ? atoi(paras[k]) : 36;  k++;
        PARA.channel = (paras.size() >= k+1) ? atoi(paras[k]) : 1;  k++;
        PARA.bkg_thresh = (paras.size() >= k+1) ? atoi(paras[k]) : 10; if(PARA.bkg_thresh == atoi("AUTO")) PARA.bkg_thresh = -1;k++;
        PARA.b_256cube = (paras.size() >= k+1) ? atoi(paras[k]) : 0;  k++;
        PARA.b_RadiusFrom2D = (paras.size() >= k+1) ? atoi(paras[k]) : 1;  k++;
        PARA.is_gsdt = (paras.size() >= k+1) ? atoi(paras[k]) : 0;  k++;
        PARA.is_break_accept = (paras.size() >= k+1) ? atoi(paras[k]) : 0;  k++;
        PARA.length_thresh = (paras.size() >= k+1) ? atoi(paras[k]) : 5;  k++;

        reconstruction_func(callback,parent,PARA,bmenu);
	}
    else if (func_name == tr("help"))
    {

        ////HERE IS WHERE THE DEVELOPERS SHOULD UPDATE THE USAGE OF THE PLUGIN


		printf("**** Usage of neurontracing_rotation tracing **** \n");
		printf("vaa3d -x neurontracing_rotation -f tracing_func -i <inimg_file> -p <channel> <other parameters>\n");
        printf("inimg_file       The input image\n");
        printf("channel          Data channel for tracing. Start from 1 (default 1).\n");

        printf("outswc_file      Will be named automatically based on the input image file name, so you don't have to specify it.\n\n");

	}
	else return false;

	return true;
}
开发者ID:Vaa3D，项目名称:vaa3d_tools，代码行数:51，代码来源:neurontracing_rotation_plugin.cpp


示例10: dofunc

bool markertree::dofunc(const QString & func_name, const V3DPluginArgList & input, V3DPluginArgList & output, V3DPluginCallback2 & callback,  QWidget * parent)
{
	vector<char*> infiles, inparas, outfiles;
	if(input.size() >= 1) infiles = *((vector<char*> *)input.at(0).p);
	if(input.size() >= 2) inparas = *((vector<char*> *)input.at(1).p);
	if(output.size() >= 1) outfiles = *((vector<char*> *)output.at(0).p);

    if (func_name == tr("help"))
	{
        v3d_msg("To be implemented");
	}
	else return false;
    
    return true;
}
开发者ID:Vaa3D，项目名称:vaa3d_tools，代码行数:15，代码来源:marker_minspanningtree_plugin.cpp


示例11: dofunc

bool border_tips::dofunc(const QString & func_name, const V3DPluginArgList & input, V3DPluginArgList & output, V3DPluginCallback2 & callback,  QWidget * parent)
{
	vector<char*> infiles, inparas, outfiles;
	if(input.size() >= 1) infiles = *((vector<char*> *)input.at(0).p);
	if(input.size() >= 2) inparas = *((vector<char*> *)input.at(1).p);
	if(output.size() >= 1) outfiles = *((vector<char*> *)output.at(0).p);

    if (func_name == tr("help"))
	{
        qDebug()<<"No do func available.";
    }
	else return false;

	return true;
}
开发者ID:Vaa3D，项目名称:vaa3d_tools，代码行数:15，代码来源:border_tips_plugin.cpp


示例12: dofunc

bool BlastNeuronPlugin::dofunc(const QString & func_name, const V3DPluginArgList & input, V3DPluginArgList & output, V3DPluginCallback2 & callback,  QWidget * parent)
{
	vector<char*> infiles, inparas, outfiles;
	if(input.size() >= 1) infiles = *((vector<char*> *)input.at(0).p);
	if(input.size() >= 2) inparas = *((vector<char*> *)input.at(1).p);
	if(output.size() >= 1) outfiles = *((vector<char*> *)output.at(0).p);

	if (func_name == tr("global_retrieve"))
	{
		return(global_retrieve_main(input, output));
	}
	else if (func_name == tr("local_alignment"))
	{
		return(local_alignment_main(input, output));
	}
	else if (func_name == tr("batch_compute"))
	{
		return (batch_compute_main(input, output));
	}
	else if (func_name == tr("pre_processing"))
	{
		return (pre_processing_main(input, output));
	}
	else if (func_name == tr("inverse_projection"))
	{
		return (inverse_projection_main(input, output));
	}
	else
	{

		printf("\nBlastNeuron Plugin: rapid global retrieval and local alignent of 3D neuron morphologies. This plugin also includes pre-processing, inverse projection and batch feature computation. by Yinan Wan.\n\n");
		printf("Functions:\n");
		printf("\t pre_processing          prune, resample and align neuron swcs.\n");
		printf("\t global_retrieve         given a query neuron, retrieve morphologically similar neurons from a neuron feature database.\n");
		printf("\t local_alignment         point to point alignment of two morphologically similar neurosn.\n");
		printf("\t batch_compute           generate neuron feature database (.nfb) file first to speed up neuron retrieve\n");
		printf("\t invert_projection       find an optimal affine transform between neuron structures regardless of topology.\n\n");
		printf("Example: \n");
        printf("\t vaa3d -x blastneuron -f pre_processing -p  \"#i input.swc #o result.swc #l 3 #s 2 #r 1 \"\n");
		printf("\t vaa3d -x blastneuron -f batch_compute -p \"#i mydatabase.ano #o features.nfb\"\n");
		printf("\t vaa3d -x blastneuron -f global_retrieve -p \"#d features.nfb #q query.swc #n 10 #m 1,2,4 #o retrieve.ano\"\n");
		printf("\t vaa3d -x blastneuron -f local_alignment -p \"#t target.swc #s subject.swc #o match.swc\"\n");
		printf("\t vaa3d -x blastneuron -f inverse_projection -p \"#i target.swc #o target_invp.swc\"\n\n");
		printf("Type vaa3d -x blastneuron -f <function_name> for instructions to run individual functions.\n");
		printf("Alternatively, you can run a query search from the neuron feature database with a bash script: try \"sh blastneuron_plugin.sh\" for detailed instruction\n\n");
		return true;
	}
}
开发者ID:Vaa3D，项目名称:vaa3d_tools，代码行数:48，代码来源:blastneuron_plugin.cpp


示例13: dofunc

bool file_transform::dofunc(const QString & func_name, const V3DPluginArgList & input, V3DPluginArgList & output, V3DPluginCallback2 & callback,  QWidget * parent)
{
	vector<char*> infiles, inparas, outfiles;
	if(input.size() >= 1) infiles = *((vector<char*> *)input.at(0).p);
	if(input.size() >= 2) inparas = *((vector<char*> *)input.at(1).p);
	if(output.size() >= 1) outfiles = *((vector<char*> *)output.at(0).p);

    if (func_name == tr("affineImage"))
	{
        qDebug()<<"==== affine and combine images ====";
        if(infiles.size()!=3 || outfiles.size()!=1){
            qDebug()<<"ERROR: please set input and output!";
            printHelp();
            return false;
        }
        QString fname_img_tar=((vector<char*> *)(input.at(0).p))->at(0);
        QString fname_img_sub=((vector<char*> *)(input.at(0).p))->at(1);
        QString fname_amat=((vector<char*> *)(input.at(0).p))->at(2);
        QString fname_output=((vector<char*> *)(output.at(0).p))->at(0);

        //init parameters
        bool b_channelSeperate = false;
        bool b_negativeShift = true;
        int interpMethod = 0;
        if(input.size() >= 2){
            vector<char*> paras = (*(vector<char*> *)(input.at(1).p));

            if(paras.size()>0){
                int tmp=atoi(paras.at(0));
                if(tmp==1)
                    interpMethod = 1;
            }
            if(paras.size()>1){
                int tmp=atoi(paras.at(1));
                if(tmp==0)
                    b_negativeShift = false;
            }
            if(paras.size()>2){
                int tmp=atoi(paras.at(2));
                if(tmp==1)
                    b_channelSeperate = true;
            }
        }
        doAffineImage(callback, fname_img_tar, fname_img_sub, fname_amat, fname_output, interpMethod, b_negativeShift, b_channelSeperate);
	}
	else if (func_name == tr("help"))
	{
        printHelp();
	}
	else return false;

	return true;
}
开发者ID:Vaa3D，项目名称:vaa3d_tools，代码行数:53，代码来源:file_transform_plugin.cpp


示例14: dofunc

bool AnisoDiffPlugin_littlequick::dofunc(const QString & func_name, const V3DPluginArgList & input, V3DPluginArgList & output, V3DPluginCallback2 & callback,  QWidget * parent)
{
	if (func_name == tr("anisodiff_littlequick_menu"))
	{
		cout<<"============== Welcome to anisodiff function ================="<<endl;

		bool bmenu = false;
		input_PARA PARA;

		vector<char*> * pinfiles = (input.size() >= 1) ? (vector<char*> *) input[0].p : 0;
		vector<char*> infiles = (pinfiles != 0) ? * pinfiles : vector<char*>();

		if(infiles.empty())
		{
			fprintf (stderr, "Need input image. \n");
			return false;
		}
		else
			PARA.inimg_file = infiles[0];

		anisodiff_func(callback,parent,PARA,bmenu);
	}
	else
	{
		printHelp();
	}

	return true;
}
开发者ID:Vaa3D，项目名称:vaa3d_tools，代码行数:29，代码来源:plugin_anisodiff_littlequick.cpp


示例15: resample_swc_toolbox

bool resample_swc_toolbox(const V3DPluginArgList & input)
{
	vaa3d_neurontoolbox_paras * paras = (vaa3d_neurontoolbox_paras *)(input.at(0).p);
	NeuronTree nt = paras->nt;
	QString fileOpenName = nt.file;
	
	bool ok;
	double step = QInputDialog::getDouble(0, "Please specify the resampling step length","Step length:",1,0,2147483647,0.1,&ok);
	if (!ok)
		return true;
	
	NeuronTree result = resample(nt,step);
	QString fileDefaultName = fileOpenName+QString("_resampled.swc");
	//write new SWC to file
	QString fileSaveName = QFileDialog::getSaveFileName(0, QObject::tr("Save File"),
			fileDefaultName,
			QObject::tr("Supported file (*.swc)"
				";;Neuron structure	(*.swc)"
				));
	if (!export_list2file(result.listNeuron,fileSaveName,fileOpenName))
	{
		v3d_msg("fail to write the output swc file.");
		return false;
	}

	return true;

}
开发者ID:CBL-ORION，项目名称:vaa3d_tools-1，代码行数:28，代码来源:resample_swc_func.cpp


示例16: dofunc

bool open_fiji::dofunc(const QString & func_name, const V3DPluginArgList & input, V3DPluginArgList & output, V3DPluginCallback2 & callback,  QWidget * parent)
{
    if (func_name == tr("openfiji"))
    {
    vector<char*> infiles, outfiles;
    if(input.size()==0) {
        cout<<"for usage type: vaa3d -x open_fiji -f help"<<endl;
        return false;
    }
    if(input.size() >= 1) infiles = *((vector<char*> *)input.at(0).p);
    if(input.size() >= 2)
    {
    if(output.size() >= 1) outfiles = *((vector<char*> *)output.at(0).p);
    }
    char * inimg_file = ((vector<char*> *)(input.at(0).p))->at(0);
    char * outimg_file = ((vector<char*> *)(output.at(0).p))->at(0);


        call_open_using_imagej(false, QString(inimg_file    ),QString(outimg_file), callback);

    }
	else if (func_name == tr("help"))
	{
        cout<<"Usage : vaa3d -x open_fiji -f openfiji -i <input_file_name> -o <output_file_name>  "<<endl;
    }
	else return false;

	return true;
}
开发者ID:Vaa3D，项目名称:vaa3d_tools，代码行数:29，代码来源:open_fiji_plugin.cpp


示例17: neuron_toolbox_func

bool neuron_toolbox_func(V3DPluginCallback2 & callback, QWidget * parent, const V3DPluginArgList & input, V3DPluginArgList & output)
{
	QString test_str1 = QString(((vaa3d_neurontoolbox_paras *)(input.at(0).p))->nt.file);
	QString test_str = QFileInfo(test_str1).baseName() + "." + QFileInfo(test_str1).completeSuffix();
	SelectPluginDlg * selectDlg = new SelectPluginDlg(parent, callback, input);
	selectDlg->setWindowTitle(test_str + " - Select plugin to run...");
	selectDlg->show();
	return true;
}
开发者ID:Vaa3D，项目名称:vaa3d_tools，代码行数:9，代码来源:neuron_toolbox_func.cpp


示例18: v3dneuron_tracing

bool v3dneuron_tracing(const V3DPluginArgList & input, V3DPluginArgList & output)
{
	cout<<"Welcome to v3dneuron_tracing"<<endl;
	if(input.size() != 2 || output.size() != 1) return false;
	char * paras = 0;
	if(((vector<char*> *)(input.at(1).p))->empty()){paras = new char[1]; paras[0]='\0';}
	else paras = (*(vector<char*> *)(input.at(1).p)).at(0);
	cout<<"paras : "<<paras<<endl;

	for(int i = 0; i < strlen(paras); i++)
	{
		if(paras[i] == '#') paras[i] = '-';
	}
	cout<<"paras : "<<paras<<endl;

	cout<<string("v3dneuron_tracing ").append(paras).c_str()<<endl;
	system(string("v3dneuron_tracing ").append(paras).c_str());
	return true;
}
开发者ID:Vaa3D，项目名称:vaa3d_tools，代码行数:19，代码来源:v3dneuron_tracing_func.cpp


示例19: dofunc

bool nctuTW::dofunc(const QString & func_name, const V3DPluginArgList & input, V3DPluginArgList & output, V3DPluginCallback2 & callback,  QWidget * parent)
{
	if (func_name == tr("tracing_func"))
	{
        bool bmenu = false;
        input_PARA PARA;

        vector<char*> * pinfiles = (input.size() >= 1) ? (vector<char*> *) input[0].p : 0;
        vector<char*> * pparas = (input.size() >= 2) ? (vector<char*> *) input[1].p : 0;
        vector<char*> infiles = (pinfiles != 0) ? * pinfiles : vector<char*>();
        vector<char*> paras = (pparas != 0) ? * pparas : vector<char*>();

        if(infiles.empty())
        {
            fprintf (stderr, "Need input image. \n");
            return false;
        }
        else
            PARA.inimg_file = infiles[0];
        int k=0;
        PARA.inmarker_file = paras.empty() ? "" : paras[k]; if(PARA.inmarker_file == "NULL") PARA.inmarker_file = ""; k++;
        PARA.threshold = (paras.size() >= k+1) ? atof(paras[k]) : 0.9;
        reconstruction_func(callback,parent,PARA,bmenu);
	}
    else if (func_name == tr("help"))
    {

        ////HERE IS WHERE THE DEVELOPERS SHOULD UPDATE THE USAGE OF THE PLUGIN


		printf("**** Usage of nctuTW tracing **** \n");
        printf("vaa3d -x nctuTW -f tracing_func -i <inimg_file> -p <inmarker_file> <threshold>\n");
        printf("inimg_file       The input image\n");
        printf("inmarker_file    If no input marker file, please set this para to NULL and it will detect soma automatically.\n");
        printf("threshold        Default 0.9, otherwise the threshold (from 0 to 1) specified by a user will be used.\n");

        printf("outswc_file      Will be named automatically based on the input image file name, so you don't have to specify it.\n\n");

	}
	else return false;

	return true;
}
开发者ID:Vaa3D，项目名称:vaa3d_tools，代码行数:43，代码来源:nctuTW_plugin.cpp


示例20: eswc2swc_toolbox

int eswc2swc_toolbox(const V3DPluginArgList & input)
{
	vaa3d_neurontoolbox_paras * paras = (vaa3d_neurontoolbox_paras *)(input.at(0).p);
	NeuronTree neuron = paras->nt;
	QString fileOpenName = neuron.file;
	
	vector<V3DLONG> segment_id, segment_layer;
	vector<double> feature;
	if (fileOpenName.endsWith(".eswc") || fileOpenName.endsWith(".ESWC"))
	{
		neuron = read_eswc(segment_id, segment_layer, feature, fileOpenName);
		if (!swc2eswc(neuron,segment_id, segment_layer))
		{
			v3d_msg("Cannot convert eswc to swc.\n");
			return -1;
		}
	}
	else {
		v3d_msg("The file type you specified is not in .eswc format. Please check.");
		return -1;
	}
	int ret = QMessageBox::Yes;
	if (check_eswc(neuron, segment_id, segment_layer)==-1)
	{
		QMessageBox msgBox;
		msgBox.setText("Something is wrong with the eswc file.");
		msgBox.setInformativeText("Do you still want to convert it to swc?");
		msgBox.setStandardButtons(QMessageBox::Yes | QMessageBox::Cancel);
		msgBox.setDefaultButton(QMessageBox::Cancel);
		ret = msgBox.exec();
	}
	if (ret==QMessageBox::Cancel)
		return -1;
	QString fileDefaultName = fileOpenName;
	fileDefaultName.chop(4);
	fileDefaultName += QString("swc");
	//write new SWC to file
	QString fileSaveName = QFileDialog::getSaveFileName(0, QObject::tr("Save File"),
			fileDefaultName,
			QObject::tr("Supported file (*.swc)"
				";;Neuron structure	(*.eswc)"
				));
	if (!export_swc(neuron,qPrintable(fileSaveName)))
	{
		v3d_msg("fail to write the output swc file.");
		return -1;
	}
	return 1;
}
开发者ID:Vaa3D，项目名称:vaa3d_tools，代码行数:49，代码来源:eswc_converter_func.cpp



注：本文中的V3DPluginArgList类示例由纯净天空整理自Github/MSDocs等源码及文档管理平台，相关代码片段筛选自各路编程大神贡献的开源项目，源码版权归原作者所有，传播和使用请参考对应项目的License；未经允许，请勿转载。

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