ID has to be unique, else JavaScript works with the first one only.
$(document).ready(function() {
$('a[href$="/truck-bed-covers/camper-tops"]').each(function(){
$(this).attr("href", "../camper-tops");
});
});
But I don't think this is the right way. You should find place where you create incorrect links and repair it there (in PHP/DB or where links came from).
与恶龙缠斗过久,自身亦成为恶龙;凝视深渊过久,深渊将回以凝视…