python - In each row of pandas, starting at the first non-NaN a window of X values remains untouched while all other values are NaN

Question

Citizens of StackOverflow,

I am currently running iterations over a dataframe that can be millions of rows long. In each row of my dataframe I have leading NaNs (desired), followed by values. I want to only have X number of values in each row, followed by NaN's after that. Effectively I want a window of only X values, beginning with the first non-NaN and all other positions in the row will be NaN.

My solution is very slow. Additionally, I didn't find similar questions to be sufficiently helpful (most concerned just first/last NaN).

An example where the window size is 3:

import pandas as pd
import numpy as np

x = 3

data = {'2018Q3': [0,   np.nan,   np.nan,      np.nan,      np.nan], 
        '2018Q4': [1,      np.nan,   np.nan,       np.nan,    10],
        '2019Q1': [2,        3,    np.nan,      np.nan, 12],
        '2019Q2': [3,        4,    np.nan,      8,         14],
        '2019Q3': [4,        5,    np.nan,      9,         22]}  

df = pd.DataFrame.from_dict(data) 
print(df)

      2018Q3  2018Q4  2019Q1  2019Q2  2019Q3
0     0.0     1.0     2.0     3.0     4.0
1     NaN     NaN     3.0     4.0     5.0
2     NaN     NaN     NaN     NaN     NaN
3     NaN     NaN     NaN     8.0     9.0
4     NaN    10.0    12.0    14.0    22.0

Results should look like this:

   2018Q3  2018Q4  2019Q1  2019Q2  2019Q3
0     0.0     1.0     2.0     NaN     NaN
1     NaN     NaN     3.0     4.0     5.0
2     NaN     NaN     NaN     NaN     NaN
3     NaN     NaN     NaN     8.0     9.0
4     NaN    10.0    12.0    14.0     NaN

MY SOLUTION:

def cut_excess_forecast(num_x, dataf): 
    Total_Col = len(dataf.columns.values) # total columns
    df_NEW = pd.DataFrame()
    for index, row in dataf.iterrows():
        nas = row.isnull().sum(axis =0)  # number of nulls
        good_data = nas +  num_x # gives number of columns that should be untouched
        if good_data >= Total_Col: # if number of columns to not be touched > available columns, pass
            pass # all data available is needed
        else:
            cutoff = Total_Col-good_data 
            row[-cutoff:] = np.nan #change to NaN excess columns in this row

        df_NEW = df_NEW.append(row.copy()) #append changed row to new index
    df_NEW.index = dataf.index #move over original index to the new dataframe
    return df_NEW.copy()

df2 = cut_excess_forecast(x, df)
print(df2)

Sorting is allowed, so long as the index is untouched. Cheers and thanks in Advance.

question from:https://stackoverflow.com/questions/65836235/in-each-row-of-pandas-starting-at-the-first-non-nan-a-window-of-x-values-remain

Answer 1

Try:

df.where(df.notna().cumsum(1)<4)

Output:

   2018Q3  2018Q4  2019Q1  2019Q2  2019Q3
0     0.0     1.0     2.0     NaN     NaN
1     NaN     NaN     3.0     4.0     5.0
2     NaN     NaN     NaN     NaN     NaN
3     NaN     NaN     NaN     8.0     9.0
4     NaN    10.0    12.0    14.0     NaN

Explanation:

1. df.notna() masks the NaN values with False and non-NaN values with True.

   2018Q3  2018Q4  2019Q1  2019Q2  2019Q3
0    True    True    True    True    True
1   False   False    True    True    True
2   False   False   False   False   False
3   False   False   False    True    True
4   False    True    True    True    True

2. Chain that with cumsum(1) will count the non-NaN values on the rows from left to right.

   2018Q3  2018Q4  2019Q1  2019Q2  2019Q3
0       1       2       3       4       5
1       0       0       1       2       3
2       0       0       0       0       0
3       0       0       0       1       2
4       0       1       2       3       4

3. Then we compare to <4 to mask where the counts exceed the threshold 4 with False

   2018Q3  2018Q4  2019Q1  2019Q2  2019Q3
0    True    True    True   False   False
1    True    True    True    True    True
2    True    True    True    True    True
3    True    True    True    True    True
4    True    True    True    True   False

4. Finally wrap that around .where to mask those cells with np.NaN.